Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_022988.1 Length=74210 Score E Sequences producing significant alignments: (Bits) Value seq132 201 5e-47 seq9105 185 4e-42 seq964 156 2e-33 seq8692 152 2e-32 >seq132 Length=332281 Score = 201 bits (222), Expect = 5e-47 Identities = 405/598 (68%), Gaps = 7/598 (1%) Strand=Plus/Minus Query 64728 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGT 64787 |||| ||||| | || || || ||||| || ||| || || ||| |||| ||| Sbjct 246290 CCGAAAGGCCGCATTGTCGAGATTTACGGGCCGGAAAGCTCGGGTAAGACAACCCTGGCG 246231 Query 64788 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 64847 || || || | || | || |||||| || |||| | ||||| | ||||||| || Sbjct 246230 CTGCATACGATTGCGGAAGCCCAGAAGAAGGGCGGCATCTGCGCCTTCGTCGACGCGGAA 246171 Query 64848 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 64907 || | |||||||| | || ||| ||| || ||||| || || || || || | Sbjct 246170 CATGCGCTGGACCCGGTCTATGCCCGCAAGCTGGGCGTGGATCTGGAGAATCTGCTGATC 246111 Query 64908 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 64967 ||||| || || ||||||||||| ||||||||| ||| || || || || Sbjct 246110 TCGCAGCCCGATACGGGCGAGCAGGCGCTGGAGATCACCGACACGCTGGTGCGTTCCGGT 246051 Query 64968 GAGCTGTCCATCGTC--GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCG 65025 | | | | || || || || || || || || || || ||||| || || ||| Sbjct 246050 GCGAT--CGATGTTCTGGTGGTCGATTCCGTTGCCGCTTTGACCCCGCGTGCGGAAATCG 245993 Query 65026 AAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGC 65085 ||||||| || || || || | ||||||||| || ||||| ||| ||||| ||| Sbjct 245992 AAGGCGAGATGGGCGATTCTCTCCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGC 245933 Query 65086 GCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGC 65145 ||||||| |||| |||| ||| | ||||| || | | |||||||| | | Sbjct 245932 GCAAGCTGACCGCATCCATTTCCCGTTCCAACTGCATGGTCATTTTCATCAACCAGATCC 245873 Query 65146 GCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCTT 65205 || |||||||||| ||| | ||| || ||| ||||| ||||||||||| || Sbjct 245872 GCATGAAGATCGGC---GTGATGTTCGGTTCGCCTGAAACCACGACGGGCGGCAATGCGC 245816 Query 65206 TGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCG 65265 ||| ||||| || || || || | ||| |||| ||||||| | ||||||| | | Sbjct 245815 TGAAATTCTATGCTTCGGTGCGTCTCGATATCCGCCGCATCGGTGCGCTGAAGGAACGTG 245756 Query 65266 ATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 65323 | |||| |||||||||| ||||| || ||||| |||||||||||||| || || || Sbjct 245755 ACGAGGTGGTCGGCAACCAGACCCGCGTCAAGGTGGTCAAGAACAAGCTTGCGCCCCC 245698 >seq9105 Length=354 Score = 185 bits (204), Expect = 4e-42 Identities = 193/250 (77%), Gaps = 5/250 (2%) Strand=Plus/Minus Query 64978 TCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCG 65037 || ||||| ||||||| |||||||| || ||||| ||||||||| |||| ||||| || | Sbjct 246 TCATCGTCATTGACTCCGTGGCGGCGCTCGTGCCCCGCGCCGAGATCGAGGGCGAGATGG 187 Query 65038 GGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCG 65097 | ||| |||||||| ||||| ||||| |||||||||||||| |||| |||||||||| Sbjct 186 GCGACTCGCACGTCGGTCTGCAGGCGCGACTCATGTCGCAGGCGCTGCGTAAGCTCACCG 127 Query 65098 G-CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATC 65156 | || |||| ||||||||| || | ||| |||||||| | |||||||||||| Sbjct 126 GTGGCCTGAACCAG-ACCAACACGACGATGATCTTCATCAACCAGCTTCGCGAGAAGATC 68 Query 65157 GGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTAC 65216 || ||| || |||| || ||||| ||| | || || ||||| ||| ||||||| Sbjct 67 GG---CGTCTTCTTCGGCTCGCCCGAGACGACCGCCGGTGGTAAGGCGCTGAAGTTCTAC 11 Query 65217 GCCTCAGTCC 65226 ||||| |||| Sbjct 10 GCCTCGGTCC 1 >seq964 Length=324 Score = 156 bits (172), Expect = 2e-33 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 65207 GAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGA 65266 || |||||||||||| ||||||||||| ||||||| |||| ||| ||||| || Sbjct 1 GAAGTTCTACGCCTCGGTCCGCATGGACATCCGTCGTATCGAGACCCTCAAGGACGGAAC 60 Query 65267 TGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCA 65326 || || ||||| ||||||||| |||| ||||| |||||||||||| |||| |||||| Sbjct 61 CGACGCCGTCGGAAACCGCACCAGGGTCAAGGTGGTCAAGAACAAGATGGCGCCGCCGTT 120 Query 65327 CCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCT 65386 | | ||||||||| | || | ||||| | |||||||| ||||||| | || | Sbjct 121 CAAGCAGGCCGAGTTCGACATCCTCTACGGCGTCGGCATCTCCCGTGAGGGCAGCCTGAT 180 Query 65387 CGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACG 65442 |||| | | ||| ||| | | | ||||||||||||||| | |||| || |||| Sbjct 181 CGACTTCGGCGTCGAGCACGCCATCGTGAAGAAGTCGGGCTCGTGGTACACCTACG 236 >seq8692 Length=1388 Score = 152 bits (168), Expect = 2e-32 Identities = 294/425 (69%), Gaps = 8/425 (2%) Strand=Plus/Plus Query 64668 GTGGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGG-TA 64726 || || ||||| |||||||| || | ||||| ||| || ||||| || || | Sbjct 968 GTCGAGGTCATCCCCACCGGTTCGCTGATGCTGGATATCGCACTCGGCATTGGTGGACTG 1027 Query 64727 CCCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTG 64786 ||| |||||| | || || ||||||||||| || ||||| || || ||| | || ||| Sbjct 1028 CCCAAGGGGC-GTGTCGTTGAAATCTACGGTCCGGAATCCTCGGGCAAGACCACCCTGAC 1086 Query 64787 TCTCCACGCGGTGGCC-AATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTG 64845 || || || | ||| ||||| |||||| || |||| ||| |||| ||||||||| | Sbjct 1087 CCTGCAGGCCATTGCCGAATGC-CAGAAGAAGGGCGGCACCGCTGCCTTCATCGACGCCG 1145 Query 64846 AGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGG 64905 |||| | |||||||| |||||| ||| || ||| || | ||| |||| || Sbjct 1146 AGCATGCACTGGACCCGATCTACGCCGCCAAGCTGGGCGTGAACGTGGACGACCTGCTGC 1205 Query 64906 TGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTG 64965 || ||||| || || || |||||||| ||||| |||| ||| | || || ||| Sbjct 1206 TGTCGCAGCCCGATACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGGTCCA 1265 Query 64966 GCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCG 65025 || | || ||| || || || ||||| || || || ||| || ||||| ||| Sbjct 1266 GCTCGGTGGACATTGTGGTGGTCGACTCGGTCGCCGCGCTGACCCCCAAGGCCGAAATCG 1325 Query 65026 AAGGCGACATCGGGGA-CAG-TCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCAT 65083 ||||||| || || || ||| | || |||||||| || || || ||| ||||| | Sbjct 1326 AAGGCGAAATGGGCGACCAGCTGCCG--GGCCTGCAGGCCCGTCTGATGAGCCAGGCGCT 1383 Query 65084 GCGCA 65088 ||||| Sbjct 1384 GCGCA 1388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 237308490303442