Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq6167 109 2e-19 seq287 89.7 1e-13 seq136 89.7 1e-13 seq104 82.4 2e-11 >seq6167 Length=616 Score = 109 bits (120), Expect = 2e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 23539 CCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGGTGC 23598 |||||||||||||| || || || | || |||| ||||||||| | ||| ||||||||| Sbjct 415 CCCTTGCGCAGATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGCACCACGCGGTGC 356 Query 23599 CATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGCC 23658 ||||| |||| ||| ||| || ||||| ||||| |||| |||| |||||||| Sbjct 355 CATTCCGTCTGCTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTTTCTGACGTGGCG 296 Query 23659 AGGCTG-ATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCGCACTTCCGGGTCATTACC 23717 | ||| | ||| || || | ||||| | | ||| || |||||||| ||||| || Sbjct 295 A-CCTGCAGGTTTGCCACTGCGCCCCCGTTGGGGATGTAACGGACTTCCGGATCATTGCC 237 Query 23718 CAGGCGGCCAATCAGGTCTACTTTGTT 23744 ||| || || | ||| || ||||| Sbjct 236 CAGACGCCCGACGAGGATGACCTTGTT 210 >seq287 Length=224423 Score = 89.7 bits (98), Expect = 1e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 |||||| |||| | ||||||||||| | |||||| ||||||||||| |||||||||| Sbjct 12439 TGGCGATCCCGGCTGGATTCGAACCAGCGACCGTCGGCTTAGAAGGCCGGTGCTCTATCC 12498 Query 21123 AGCTGAGCTACGGGGCC 21139 |||||||||||||| || Sbjct 12499 AGCTGAGCTACGGGACC 12515 >seq136 Length=398197 Score = 89.7 bits (98), Expect = 1e-13 Identities = 123/170 (72%), Gaps = 13/170 (8%) Strand=Plus/Plus Query 23496 CCACTTGCGTGTCTGCAGCTTGCC-----GATGATCGCGCATTCACTTCCCTTGCGCAGA 23550 ||||||||| ||||||||| ||| ||| | | ||| | |||| ||| || Sbjct 368306 CCACTTGCGGGTCTGCAGCGCGCCTTCCAGATAAACCTTCATGCCCTTC--TTG---AGG 368360 Query 23551 TACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACA---CGACGCGGTGCCATTCGGTC 23607 |||| | || | || ||| | ||| || ||| | |||||| ||||||||||||| Sbjct 368361 TACTGTTCAGCCACCTTGGCCAGGTTGTCGTTGAAAATGACGACGCTGTGCCATTCGGTC 368420 Query 23608 TTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGC 23657 |||||||||||||||||| | | |||||| |||| ||||||| ||||| Sbjct 368421 TTTTCCTTGCGCTCGCCGCTGTTCTTGTCGCGCCAGCTTTCCGAGGTGGC 368470 >seq104 Length=924147 Score = 82.4 bits (90), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121 |||||| ||||||||||||||||||||||||| | ||| | ||| | |||||||| Sbjct 133277 ATGGCGCACCCGACAGGATTCGAACCTGTGACCTCTGCCTTCGGAGGGCAGCGCTCTATC 133336 Query 21122 CAGCTGAGCTACGGGGCCGATTAGGCGGCG 21151 ||||||||||||||| | || |||| ||| Sbjct 133337 CAGCTGAGCTACGGGTGC-ATGAGGCTGCG 133365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139261066332584