Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_023007.1 Length=168876 Score E Sequences producing significant alignments: (Bits) Value seq232 190 2e-43 >seq232 Length=384298 Score = 190 bits (210), Expect = 2e-43 Identities = 444/658 (67%), Gaps = 14/658 (2%) Strand=Plus/Plus Query 89107 ACACATCAAAGAGTTATGGGAATTAGGACATTTACCGATTGAAATTAAAGCGTTAAAAGA 89166 ||| ||| |||| ||| || |||||| || | ||||| | ||||||| || ||| Sbjct 85039 ACATATCGAAGATTTACACGATTTAGGATATATTCCGATGGTTTTTAAAGCCTTGCCAGA 85098 Query 89167 GGGAACTTTAGCACCAATTAAAACACCAGTATTGACGATTGAAAATACAGATGAC--AAT 89224 ||| | | ||| | | | ||| | || ||||| | ||||| ||| | ||| Sbjct 85099 AGGAGCAAGTGTTCCATTAAGAGTTCCAATGTTTACGATGTACAATAC-GATTCCGGAAT 85157 Query 89225 TTCTTCTGGGTTACAAACTACATTGAAAC--TATTATCTCAAATGAGATTTGGTTACCAA 89282 || |||||| | ||||| || ||||||| || | ||| | || ||||||| || Sbjct 85158 TT-TTCTGGCTGACAAATTATTTTGAAACGTTACTTTCTGCAGTGG--TTTGGTTGCCTT 85214 Query 89283 TGACATCTGCAACAATTGCATATGAGTATCGTAAACTATTAGATGAGTTTGCGTTAAGAA 89342 | || ||||| |||||| | || ||| | ||| ||||||| | ||||| | | || Sbjct 85215 GTAACTCAGCAACGATTGCAAAAGAATATAGAAAAGTATTAGACAAATTTGCCTCAGAAA 85274 Query 89343 CTGTAGGAAGTACAGATGGAGTAGAGTTTCAAGGACACGATTTCTCAATGCGTGGAATGT 89402 || | |||| ||||| | || | |||||||||||||||| | |||||| Sbjct 85275 CTTCTTCTGTTCCAGAATTTGTAGACTGGCAGGCACACGATTTCTCAATGAGAGGAATGG 85334 Query 89403 CTTCATTTGATGCATCTAAAGCTTCTGGAGCAGGTCACTTGTTGAGTTTTACAGGTACAG 89462 | |||| ||| | |||||| ||| || || || |||||||||||||| | | Sbjct 85335 GTGGTATTGAAGCAGCGCTGACTTCTGCAGCTGGACATTTATTGAGTTTTACAGGATCTG 85394 Query 89463 ATACAATTCCTGCAATC-ATGTATCATGAAGAGTTTTACAAAGCAAATATTGAGAATGAA 89521 |||| ||||| || ||| || | | | ||||| | ||| || || ||| || || ||| Sbjct 85395 ATACCATTCCGGCGATCGATTTCTTA-GAAGAATATTATAACGCCAATTCAGACAAAGAA 85453 Query 89522 TTGGTAGGAACTTCCATTCCTGCGACTGAACACAGTGTAATGTGTGCATATGGA-GATAC 89580 ||||| | | ||| | |||| || ||||| ||||||||| ||| | | || | Sbjct 85454 TTGGTGGCAGGTTCAGTCGCTGCAACAGAACATTCTGTAATGTG--CATGGGAACGACAG 85511 Query 89581 AAA-TGAATTTGAGTTATTCAAACGATTAATCACACAAATCTATCCAAACGGATTCTTCT 89639 || ||| | || |||||| ||||||| ||| || | |||||||| ||| | | | Sbjct 85512 AAGGTGAGTACGAAACCTTCAAAAGATTAATTACAGAAGTTTATCCAAAAGGAATTGTTT 85571 Query 89640 CTGTAGTTTCTGATACATGGGATTTCTGGAAGGTTGTTGGAGAGTATCTGCCAAAATTAA 89699 || | ||||||||||| |||||||| ||||| ||| | ||| || || |||| ||||| Sbjct 85572 CTATCGTTTCTGATACTTGGGATTTATGGAAAGTTTTAACAGATTACCTCCCAAGATTAA 85631 Query 89700 AAGATAAAATTATGGAACGTGATGGTCGAGTAGTAATCCGTCCAGATAGTGGTGACCC 89757 |||| | || | | || || ||| || || ||||| || |||||||| || Sbjct 85632 AAGAAGATATCGTTTCTAGAGAAGGAAAAGTGGTTATTCGTCCTGACAGTGGTGATCC 85689 Score = 93.3 bits (102), Expect = 5e-14 Identities = 213/316 (67%), Gaps = 6/316 (2%) Strand=Plus/Plus Query 90049 AGGATTAATCGAATGTCTCTGGAATATTTTCGGAGGTACAATCACTGAGAAAGGTTATCG 90108 |||| | ||||||| || ||| || |||| || || || | | || ||||||| Sbjct 85741 AGGAGTTATCGAATTGCTTTGGGATGTTTTTGGTGGAACGACAAACGATAAAGGTTTCAA 85800 Query 90109 TTTACTAGATACACATATCGGTGCGATTTATGGAGATTCTATCACTCTAGAACGTGCTA- 90167 | | | | |||| ||||| || |||||||| ||| ||| || ||| | | || | Sbjct 85801 AGAATTGGTTCCACAAATCGGAGCAATTTATGGCGATAGTATTACCGTAGCAAGAGCAAC 85860 Query 90168 -GAAAGATTGTAGTAAGATTAGA-GCGTAAAGGATTTGCATCTCTGAATGTTGTATTCGG 90225 |||| | || |||||| | ||| ||||| ||||| ||| || || || || || Sbjct 85861 TGAAATCTGCGAG--AGATTAAAAGCG-AAAGGTTTTGCTTCTACAAACGTGGTTTTAGG 85917 Query 90226 TATCGGTAGTTTCACATACCAATATAACACTCGTGACACATTTGGATTTGCATGTAAGGC 90285 || || |||||| || ||||| || || ||||| || ||||| |||||| || || Sbjct 85918 AATTGGATCTTTCACGTATCAATACAATACACGTGATACTTTTGGTTTTGCAATGAAAGC 85977 Query 90286 TACATATGCAGTTGTTGATGGTGAAGAGAGAATGCTGTTTAAAGACCCGAAAACAGATGA 90345 || || | || || | ||||| | ||| | || ||||| || | ||||| || Sbjct 85978 AACTTACGGAGAAGTAAACGGTGAGGGAAGAGCAATCTTCAAAGATCCTATTACAGACGA 86037 Query 90346 CGGAACTAAGAAGTCT 90361 ||||||||| || ||| Sbjct 86038 CGGAACTAAAAAATCT 86053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540184825465920