Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1158 120 2e-22 seq444 116 3e-21 >seq1158 Length=25781 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || || | ||| || ||||| || |||||||| || || || | Sbjct 9481 CCTCCACGGAGACGAAGGACGAGATGGAGGGTGGACTCCTTTTGAATATTGTAGTCGGAG 9540 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| ||||| || || ||||| | ||||| | ||| || || || ||| Sbjct 9541 AGAGTACGACCATCCTCGAGCTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGA 9600 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| |||||||| ||| || || ||||| | || | ||||||||| || || Sbjct 9601 ATACCCTCCTTGTCTTG-AATCTTGGTCTTGACGTTCTCGATGGTGTCAGAACCCTCAAC 9659 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || || || || | ||| |||||||| || ||||| Sbjct 9660 CTCGAGAGTGATGGTCTTACCGGTGAGGGTCTTAACAAAAATTTGCAT 9707 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| ||||| || || || ||||||||||| ||||| | | |||||| Sbjct 9264 ACGGAGCACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAGAGAGTGCGACC 9323 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| |||||||| ||||| || | || | | ||| ||||| || || |||||||| || Sbjct 9324 ATCCTCGAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGATCGGGTGGGATACCCTCCTT 9383 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| ||| || || ||||| | || | || || ||| || || || | || | Sbjct 9384 ATCTTG-AATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCGACCTCCAAGGTAA 9442 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| | ||| || || || |||||||| Sbjct 9443 TTGTCTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 9479 >seq444 Length=38654 Score = 116 bits (128), Expect = 3e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| ||||| || ||||| ||||| ||||| | | || ||| Sbjct 5032 ACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGACC 4973 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| ||||| ||| | || | | ||| || || || ||||| ||||| || Sbjct 4972 ATCCTCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGAATTCCCTCCTT 4913 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| | | || || ||||| | || | ||| || ||| || || || | || | Sbjct 4912 GTCTTGGA-TCTTGGTCTTGACGTTCTCGATAGTATCGGAACCCTCGACCTCCAAGGTAA 4854 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| ||||| || | ||||||||||| || |||||| Sbjct 4853 TAGTCTTGCCTGTCAGAGTTTTAACAAAGATTTGCATT 4816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385156373396862