Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_023571.1 Length=46243 Score E Sequences producing significant alignments: (Bits) Value seq232 140 1e-28 seq93 95.1 4e-15 >seq232 Length=384298 Score = 140 bits (154), Expect = 1e-28 Identities = 204/283 (72%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 39956 TTTATTT-TTTCAG---CAATTCTTTTTATAACTGGCACTGCTACGGAATTTCCGGCCTG 40011 ||||| | |||||| | | ||||| ||||| |||| ||| |||||||| || || Sbjct 211747 TTTATATATTTCAGATGCCAATCTTTGAATAACGGGCATACTTACCGAATTTCCAGCTTG 211806 Query 40012 TTTGTATAAG-GC-ACTTGTAGATTCGTCTTCGGGAAGTTCGTAGTTTTTTGGATAACCC 40069 ||||||||| || | || | ||| || ||||||| | | | | |||| ||||| Sbjct 211807 TTTGTATAAATGCGAATTTGAAATT-----TCAGGAAGTTTGAAATCATCTGGAAAACCC 211861 Query 40070 TGAGTGTTGAAGGTTTCTCTCGGAGTCAATTTTCTTATTCTTTCATCTTTTGTCCTGATT 40129 ||| | || |||||| |||||||||||||| | | ||| |||| || Sbjct 211862 TGAAATCTAAAACATTCTCTTGGAGTCAATTTTCTAAAACCAAAATCGGTTGTA---ATA 211918 Query 40130 AATGGAACATTATGTCCGCCTGTACCCATATTGGCCGTCAAAGTAGGGACTACGCCACTT 40189 | ||| |||||||||||||| || ||||||||||| || ||||||||| |||| | Sbjct 211919 AGTGGTACATTATGTCCGCCCGTTCCCATATTGGCTGTTAAAGTAGGGCAAACGCTTGAT 211978 Query 40190 TTGTTTTCTCTAACATATTGTCTCCGCCACTGATAAATACTAT 40232 ||||||||||||||||||||||| | | |||||||||| || Sbjct 211979 TTGTTTTCTCTAACATATTGTCTTCTAAATTGATAAATACGAT 212021 >seq93 Length=584700 Score = 95.1 bits (104), Expect = 4e-15 Identities = 147/204 (72%), Gaps = 7/204 (3%) Strand=Plus/Minus Query 41075 AAAAGCACTGTGGCACAGC-GGAGTAAGATATAGAAGAAATTACAAGAAGCTTCCCGGCA 41133 ||||| || ||| | ||| ||| | |||| |||| | || |||| | ||||| || | Sbjct 118179 AAAAGAGCTATGGAA-AGCAGGAATTCGATACAGAAAACATGACAAAAGTCTTCCTGGAA 118121 Query 41134 AACCGGACATTGCTATTACCAAATATAAGATAGCAGTCTTTATTGATGGCGAATTCTGGC 41193 | || || |||| | || ||| ||| ||| | | ||||||||||| ||||| |||| Sbjct 118120 ATCCTGATATTGTAAATAAAAAACTAAAGCTAGTAATTTTTATTGATGGGGAATTTTGGC 118061 Query 41194 ATGGATATGATTGGGAAAATCAGAAAAAGAAGA-GAATTCATACTCACAGAGAATACTGG 41252 |||||||| |||||||| || | || | |||| || ||| | || | || | ||| Sbjct 118060 ATGGATATAATTGGGAAGATAAAAAGCAAAAGATAAAATCA-AATC---GTGATTTTTGG 118005 Query 41253 ATTCCGAAAATTGAAGGAAATATG 41276 ||| | ||||||||| |||||||| Sbjct 118004 ATTGCTAAAATTGAAAGAAATATG 117981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147832504018220