Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq2271 203 9e-48 seq3933 150 5e-32 >seq2271 Length=37941 Score = 203 bits (224), Expect = 9e-48 Identities = 501/746 (67%), Gaps = 18/746 (2%) Strand=Plus/Plus Query 1072 TGGGAGGTTGCAGAAGGTGGCCTAACTGACGGTGAGCC----ATT--CTGGTTCGTGTTC 1125 ||||| ||||| ||||||| || || |||| || | ||| |||| | | ||| Sbjct 21190 TGGGAAGTTGCTGAAGGTGCGCTGACGGACGAAGACACGGAAATTATCTGGGTGGCGTTT 21249 Query 1126 GGGAACCCCACAAGGAACACAGGTCGATTCCGGGAGTGCTGGCGTAAGTTCCGCCATCGC 1185 |||||||| || | ||||| || || ||||| || |||| || |||| | || ||| Sbjct 21250 GGGAACCCGACGCGTAACACCGGGCGCTTCCGCGAATGCTTCCGCAAGTACAAGCACCGC 21309 Query 1186 TGGAAGACCAGGCAGATCGATAGTCG-ATCGGCCAAGATGACCAACAAAGACCTAATCAA 1244 |||||| | |||||| || || || | || ||| || ||||| | | | | Sbjct 21310 TGGAAGTGCGCGCAGATTGACAGCCGCACCGTGGAAGGC-ACAAACAAGCAGCAGCTGCA 21368 Query 1245 GCAATGGGCCGCGGACTACGGCGAAGACTCCGACTTCTTCAAGGTACGTGTTCGCGGTCT 1304 | |||||| | ||||||||||||||| ||||||| | ||||| || || || || | Sbjct 21369 GAAATGGGTTGACGACTACGGCGAAGACAGCGACTTCGTGAAGGTCCGCGTGCGGGGGAT 21428 Query 1305 GTTCCCCTCGTCCTCTGATCTGCAATTCATCGGCACTGGCCTGGTCGATGCCGCAATGGC 1364 ||||| | || || || || || ||| || ||||| || | || ||| Sbjct 21429 CTTCCCTGACGCGTCAGAACTCCAGTTTATCCCAACAGGCCTTACAGACGAGGCCATGAA 21488 Query 1365 ACGCGTCGTGACTGAGGCGATGGTAAGCCACGCGCCAGTTGTTATCGGCGTTGACCCGTC 1424 || || || || | | | ||| ||||| || || |||||||||| |||||| | Sbjct 21489 GCGGGTGGTTACCGCCGGGCAGGTTGCTCACGCTCCTGTGATTATCGGCGTCGACCCGGC 21548 Query 1425 GTGGTCAGGCGATGACGAATTTGCGATCTATATGCGGCAGGGGCTGCATAGCAAGCTGAT 1484 || || || | ||| || | ||| || |||||||||||||||| ||||| || | Sbjct 21549 GTATTCCGGAGTTGATGACGCGGTGATATACCTGCGGCAGGGGCTGCACAGCAAAGTGCT 21608 Query 1485 CGCAACTCACCAGAAGTCTGATGACGACGTTCTGATGGCTCAGCGTATTGCCCAGCTGGA 1544 | || | | ||| | ||||| | | |||||| |||| || ||| | | || Sbjct 21609 CTGGACCGGCAACAAGACCACCGACGATTTGATTATGGCTAAGCGAATCGCCGACTTTGA 21668 Query 1545 AGACCAGTACAAGGCCGACGCGGTATTCGTCGACTTTGGCTATGGCACAGGCAT--TGT- 1601 |||||||||| |||| |||||||| ||| ||||||| || || ||||| || | || Sbjct 21669 AGACCAGTACCAGGCTGACGCGGTGTTCATCGACTTCGGTTACGGCACCGGGCTGAAGTC 21728 Query 1602 CAGCGCGGCTCGAGCAATGGGGC-GCAACTGGACGCTTGTGCAGTTCGGGGGTGCCTCAA 1660 || || | || || |||||| | | ||| ||| | | |||||| || | ||| | Sbjct 21729 CATCG-GTGACG-GC--TGGGGCAGGACATGGCAGCTAATCCCGTTCGGCGGCGGCTCGA 21784 Query 1661 GCGATCCGGCAATGCTGAACAAGCGTGGCGAGATCTGGAACGCGATG-AAGGAATGGCTC 1719 |||||| ||||| || ||||| || ||||| | ||| | || ||| ||||| Sbjct 21785 CCGATCCCCAGATGCTAAATAAGCGCGGAGAGATGTTCAAC-AGCTGCAAGACGTGGCTG 21843 Query 1720 AAGGCTGGCGGCGAACTGAACGACCAGCAGACCGCAGACGAGATCTCGGCGCCTGAGTAT 1779 ||| ||||||| ||| |||||||| |||| || | || | || ||| | ||||| Sbjct 21844 AAGCTAGGCGGCGCGCTGGACGACCAGGAGACGGCTAATGACCTGTCTGCGGCAGAGTAC 21903 Query 1780 CGCGTCAAGCTCGACGGCAAGATCGT 1805 |||| | | |||||||||||||| Sbjct 21904 AAAGTCAGGGTGGACGGCAAGATCGT 21929 Score = 93.3 bits (102), Expect = 1e-14 Identities = 200/294 (68%), Gaps = 4/294 (1%) Strand=Plus/Plus Query 4937 GATTGCTGAGCTGCTGTCCCAAGAAAACGAGATGCTGCTGGACATGCCCTG-GTACGAGG 4995 ||||| || || || ||||| |||||| || ||| ||||||| | ||| |||| Sbjct 26347 GATTGTCGAACTCCTTTCCCAGACAAACGAAATCCTGACGGACATGATGTTCGTA-GAGG 26405 Query 4996 GCAACCTGCCCACCGGTTCGCGCATCACCACCCGCACCGGCCTGCCGGATGTGATCTACC 5055 |||||||||| || || |||| ||| || | || |||| || || | | Sbjct 26406 GCAACCTGCCAACAGGGCACCGCACCACTGTGCGATCTGGTTTGCCATCTGCGACATGGC 26465 Query 5056 GCAAGCTGAACAGTGGTGTGCCGCCGAGCAAATCGACCACCGCGCAAGTCGACGAGGCAT 5115 || ||||||| ||||||| ||| |||||||| ||||||| || || || | | Sbjct 26466 GCTTGCTGAACTACGGTGTGCAGCCAAGCAAATCAACCACCGTACAGGTTACAGACTCCT 26525 Query 5116 GCGGCATCCTCGAAGCTCGCGGTCAGGTTGACGTGGACTTGGC-GATGCTGAATGGCAAC 5174 |||| || || ||| | | | ||||||| | |||| ||| ||||| ||||| Sbjct 26526 GCGGGATGCTGGAAACCTATGCTGAGGTTGATAAGTCTCTGGCTGAT-CTGAACGGCAAT 26584 Query 5175 ACCGCAGGTTTCCGCCTGTCTGAGTCGCGTGCATTCATGGAAGCAATGAACCAG 5228 || || | ||||| ||||| || ||||||||||| |||| ||||||||| Sbjct 26585 ACTGCTGAATTCCGTCTGTCGGAAGACCGTGCATTCATCGAAGGTATGAACCAG 26638 >seq3933 Length=4962 Score = 150 bits (166), Expect = 5e-32 Identities = 300/447 (67%), Gaps = 42/447 (9%) Strand=Plus/Minus Query 31234 TTCAACGATCCGCTCGGCCTCGTCCTGGTCGTATATGCCGGCGAACCCGAACGCGAGGCG 31293 ||| || || |||||||| || |||| ||| || || || || || ||||| || || || Sbjct 4042 TTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAGGCCAGACG 3983 Query 31294 TGCGCACTGGATCATTGCCTTGTGGCGAAGCATCCGGCGCGGATGGGACTGCCAAGGCTG 31353 || ||||| ||||| || || || || | |||||| ||||| |||||||| || Sbjct 3982 GGCACACTGAATCATGGCTTTATGACGTAACATCCGTTTGGGATGCGACTGCCACGGTCC 3923 Query 31354 GGTG--TTC--------CGC-------------TT-------GCACTCGGCCATGTACTC 31383 |||| ||| ||| || ||| || |||| |||| Sbjct 3922 GGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTTCGCGGCGGCATTCATCCATCCACTC 3863 Query 31384 AGTCGCGCTGATGGCATGGCTGCGGTCCTTCCGATAGATCTTGCAGGTGCA---TTCGGT 31440 || ||| ||| | ||| |||||||||| || || ||| ||| ||||| ||| | Sbjct 3862 GGTAACGCAGATCGGATGATTGCGGTCCTTGCGGTAAATCCGGCATGTGCAGGATTCATT 3803 Query 31441 TCCCTGCTGGTCCATTGAGAATTCCATGCCATCGAACTGTGGGTTCTCGTTGATGATCCG 31500 |||||| || || ||||| ||||| ||||| |||| || |||||||| || Sbjct 3802 GTCCTGCT----CA-----AAGTCCATACCATCAAACTGCTGGTTTTCATTGATGATGCG 3752 Query 31501 AGCCCAGCCATCCACGCCAACAACTGGCACGATGCCGTTGTTCTTGTCGGGGAATGCGTA 31560 | ||||||||| ||||| || || || ||||||||||| | ||| || ||||| ||||| Sbjct 3751 GGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTA 3692 Query 31561 CAACTCCTTGGTGAAGGGGTTCAGTTTGTACTGGTCTGCCACGATCAGCAGGGCGACCAT 31620 | || || || | || || || |||||||| || |||||||||| |||| | Sbjct 3691 AATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGATCAGCAATGCGATGAA 3632 Query 31621 CTGCGAATCATTGACCTGGCCCTTGAA 31647 ||||| ||| || | | ||| || || Sbjct 3631 CTGCGCATCGCTGGCATCGCCTTTAAA 3605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145615256419808