Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq617 336 2e-86 seq149 167 2e-35 seq53 141 7e-28 seq1687 86.0 5e-11 seq1182 86.0 5e-11 >seq617 Length=59612 Score = 336 bits (372), Expect = 2e-86 Identities = 945/1435 (66%), Gaps = 32/1435 (2%) Strand=Plus/Plus Query 281424 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 281483 |||||| ||||| | ||||| |||||||| | ||| || || || || || ||||| | Sbjct 27801 CGGCAGAGACATTCAAGATACCGTTGGCATCGATATCGAAAGTAACCTCGATCTGAGGAA 27860 Query 281484 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 | || | ||||||||||||| || | | ||| | || || || || || Sbjct 27861 CTCCACGTGGAGCAGGTGGGATACCAGAGAGCTCAAACTTGCCGAGTAAATGGTTGTCAC 27920 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 281603 || | || ||||||||||| | |||||| ||| | | ||| ||||| || | Sbjct 27921 GGGTCATACCACGCTCACCCTCGAATACCTGGATAAGTACTCCTGGTTGGTTATCAGAGT 27980 Query 281604 AAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 281663 | || | || ||| || || || || ||||| || ||||| | ||| | |||| Sbjct 27981 AGGTGGAGAAGACTTGAGACTTCTTGCATGGAATAGTAGTGTTACGTGGAATCAAGTTGG 28040 Query 281664 TCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 281723 |||| | ||||||||| || || | || || || | |||| |||||||| || | | Sbjct 28041 TCATGACACCACCAGCAGTCTCGAGTCCGAGTGACAATGGAGCGACATCAAGAAGCAAGA 28100 Query 281724 TATTTTGAAGTTTTTCATCA-----GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGC 281778 || | || || || || |||||| ||||||||| ||||| | |||||| Sbjct 28101 GATCTGCAACCTTGGCACCACCCTCGTTTGA-----AAGAATAGCAGCTTGGACAGCAGC 28155 Query 281779 ACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 281838 ||| || |||||||| ||||| || |||| || | || || | || ||| || || Sbjct 28156 ACCGTAGGCAACAGCCTCATCTGGGTTAATAGACTTGTTGAGCTCCTTGCCACCAAAGAA 28215 Query 281839 ATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTC 281898 || | ||||| | ||||| |||||||||| || || || || | ||||| || Sbjct 28216 ATCTTGGAGAAGGCTTTGAACCTTGGGAATACGAGTGGAACCACCGACGAGTACAACCTC 28275 Query 281899 ATGCACCTGTGA--TTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGA 281956 || | || | || |||| || || ||| | || || || || || || ||| Sbjct 28276 GTGGA--TGGAACGCTTGTCCAACTTGGAGTCCTTGAGGACCTTCTCGACTGGGTCGAGA 28333 Query 281957 CCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-T 282015 | | | | |||||||| | | || || ||||| ||| | || | ||| | | Sbjct 28334 CAACCACGGAACAAGTCAGCATTGAGCTCCTCGAAACGAGCACGGGT--CATTGAAGTGT 28391 Query 282016 A-TAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATA 282074 | |||| || || || || | || |||| || | | || || || || ||||| | Sbjct 28392 AGAAATCGATACCCTCAAAGAGTGAGTCAATCTCTACAGAAGCCTGTGTGGATGAAGACA 28451 Query 282075 GTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG-- 282132 | ||| || ||||| ||||| || || ||||| | || | || | |||||| Sbjct 28452 AGGTACGCTTGGCACGCTCACAGGCAGTTCTTAGACGACGAAGAGC--ACGTTGATTGGA 28509 Query 282133 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATT 282192 | | ||| | || | || | |||||| || |||||| | | || | ||| || Sbjct 28510 CATGAGATCCTTCTTGTGCTTGCGCTTGAACTCGTCAACAAAGTGGTTGACCATACGGTT 28569 Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252 |||||| || ||||| ||||| | ||||| || | || || |||| | || | || Sbjct 28570 ATCAAAGTCCTCACCACCCAAATGAGTATCACCAGCAGTGGCCTTTACCTCAAAGACACC 28629 Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 282312 || || | | ||| || | |||||| || || ||||| | ||||||||| || | Sbjct 28630 GTCCTCGATGGTCAAGAGGGAGACATCAAAAGTACCTCCACCAAGATCAAAAATGAGAAT 28689 Query 282313 ATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTC 282372 |||| | || | || || ||||||||||| |||| ||| |||||||||||||| Sbjct 28690 ATTCTTCTCACCAGCGCTCTTCTTCTCAAGACCATAGGCAATAGCTGCAGCAGTTGGTTC 28749 Query 282373 ATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCT 282432 || || || | || || || ||||| || ||||| || |||||||| | Sbjct 28750 GTTGATGATACGTTGGACGTTGAGTTTGGCAATAACACCAGCATCCTTGGTGGCTTGACG 28809 Query 282433 TTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT--TCTTTTCCA 282490 || || |||||||| || || ||||| ||||| ||||||| |||| | |||| ||| Sbjct 28810 CTGAGAGTCGTTAAAGTAGGCTGGAACTGTAATGACGGCAT-TGTTGATGGTCTTACCCA 28868 Query 282491 ATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG- 282549 | | ||| ||||| | ||||| || | || | ||| || || || | ||| || Sbjct 28869 AGA-AAGACTCGGCTGTCTCCTTCATCTTTGTCAACACCATCGAAGAGATCTCTTCGGGT 28927 Query 282550 -AGAATATTGCTTGGATTCA-TTTTGATATGATACTTCAAAATATGGTTTATTACCAACA 282607 ||| | ||| ||| |||| | ||| || | ||| || | || Sbjct 28928 TGGAAGGT--CTTCTTCTCACCCTTGA-ACTCTACCTCGATGAGTGGCTTGTCTCCCTTG 28984 Query 282608 TTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT 282667 | || || || |||||||||| |||||||| ||||| || || || ||| | Sbjct 28985 TCAACGACCTTGAATGGCCAATGCTTCATATCAGATTGGACGACATGATCTGAAAACTTA 29044 Query 282668 CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATAT 282727 | || || | || ||||||||||| | |||||| || || || | || |||||| Sbjct 29045 CGGCCGATAAGACGCTTTGCATCAAAGACAGTATTTGTAGGGTTCATAGCCACTTGATTC 29104 Query 282728 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 282787 || || ||||||||||| ||| | ||||| |||||||| | ||||| ||| ||||| Sbjct 29105 TTTGCAGCATCTCCAATGAGACGCTCTGTATCTGTAAAGGCCACATAACTTGGTGTTGTT 29164 Query 282788 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTA 282842 | ||||||||||||||| |||||||| || || | ||||||||||||| |||| Sbjct 29165 CTATTACCTTGATCATTAGCAATAATCTCTACACGATCATTTTGCCATACTCCTA 29219 >seq149 Length=52016 Score = 167 bits (184), Expect = 2e-35 Identities = 726/1135 (64%), Gaps = 25/1135 (2%) Strand=Plus/Minus Query 281756 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 281815 || || || ||||| | ||||||||| || || || || ||||| || |||| | | Sbjct 22824 AGGATGGCAGCTTGGACAGCAGCACCGTAGGCGACGGCCTCATCTGGGTTAATGGACTTG 22765 Query 281816 TTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAG--TTGTCTTACCTTAGGAATACGA 281872 || || | ||||| ||||| || | ||| || ||| ||| ||||| || ||||| Sbjct 22764 TTGAGCTCCTTACCGTTGAAGAACTCTTGCAACAAGGATTGG---ACCTTGGGGATACGG 22708 Query 281873 GATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT--TTATCCAGTTTTGAATCCA 281930 | || || || || | || || || || | || | || || || || || ||| Sbjct 22707 GTGGAACCACCGACGAGGACGATCTCGTGGA--TGGAACGCTTGTCAAGCTTGGAGTCCT 22650 Query 281931 ATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGA 281990 | || || || ||||| || |||| | | |||||||| | || || |||| Sbjct 22649 TGAGGACCTTCTCGACGGGGTCGAGACAGCCACGGAACAAGTCAGCGTTGAGCTCCTCGA 22590 Query 281991 ATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTC 282048 | || | || || ||| | || || || || || || | | || |||| || Sbjct 22589 AACGGGCACGGGT--GATTGAGGTGTAGAAGTCGATACCCTCCATGAGTGAGTCAATCTC 22532 Query 282049 AATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAG 282108 || | | ||||| || || || || | ||| |||||||| || || || || | || Sbjct 22531 GATTGAGGCTTGAGCAGATGAGGAGAGGGTACGCTTAGCACGCTCGCAAGCAGTGCGGAG 22472 Query 282109 TCTTCGTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTTTATATTTTCTCTTGAAATCT 282166 | || | || | || ||| | | | ||| | || | || | |||||| || Sbjct 22471 ACGACGGAGAGCACGT--TGGTTGGTCATGAGATCCTTCTTGTGCTTGCGCTTGAACTCA 22414 Query 282167 TCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCT 282226 || ||| | || || | ||| ||||| ||||| ||||| ||||| | ||| | || Sbjct 22413 TCGACAAAGTGAGTGACCATACGGTTATCGAAATCCTCACCACCCAAATGAGTGTCACCA 22354 Query 282227 GACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA--GAGACAAAAGAGTAACATCATGGG 282284 | ||||| | || | || | ||||| || | | || |||||| ||||| | Sbjct 22353 GCAGTAGCCTTGACCTCAAAGACACCATCCTCGATGGTGAGCAAAGAG--ACATCGAAAG 22296 Query 282285 TTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGAC 282344 ||||||| || | ||| || || || | | | | || || || || || |||| Sbjct 22295 TTCCACCTCCGAGATCGAAGATGAGGATGTGCTTCTCGGTGGAAGACTTCTTCTCGAGAC 22236 Query 282345 CATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAA 282404 | || |||| || |||||||| || || || || || | || | || |||| Sbjct 22235 CGTAGGCAATGGCGGCAGCAGTGGGCTCGTTGATGATACGTTGGACGGTGAGCTTGGCAA 22176 Query 282405 TTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAA 282464 | || || || || |||||||| | ||| || ||||| || || ||||| || || | Sbjct 22175 TGACACCAGCGTCCTTGGTGGCTTGACGTTGGGAGTCGTTGAAGTAGGCAGGGACGGTGA 22116 Query 282465 TAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTA 282524 | ||||| | | || || || | | | || || | ||||| || | Sbjct 22115 TGACGGCGTTGCTGACGGTCTTACCGAGGTGGGACTCAGCAGTCTCCTTCATCTTCAAGA 22056 Query 282525 AAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTT 282584 | ||| |||||||| | ||||| || | ||||| ||| | || |||| Sbjct 22055 GGACCATGGATGAAATCTCCTCTGGTGAGAAGGTCTTGGTCTCACCCTTGTACTCGACTT 21996 Query 282585 CAAAATATGGTTTATTACCAACATTA---ATAACTTTAAATGGCCAATATTTCATATCTG 282641 || ||||| || | ||| | || | || || |||||||| | |||||||| | Sbjct 21995 GCAAGTATGGCTTGTCACCCTCCTTTTGGACGACCTTGAATGGCCAGTGCTTCATATCGG 21936 Query 282642 ATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTAT 282701 ||||||| |||||| || | | |||||| | || || ||||| ||||| || | Sbjct 21935 CTTGAACAACGTGGTCAGAGAACTTACGACCAATAAGACGCTTAGCATCGAAAATGGTGT 21876 Query 282702 TGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTG 282761 ||||||| || | ||| |||| | ||||| ||||| ||||| ||| | || | || Sbjct 21875 TGGTTGGGTTCATGGCAACTTGGTTCTTGGCAGCATCACCAATGAGACGCTCACTGTCGT 21816 Query 282762 TAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTT 282821 | || | || ||||| || || || || ||||| ||||| ||||| || ||||| Sbjct 21815 TGAAGGCGACGTATGAGGGGGTGGTACGGTTACCCATGTCATTAGCAATGATCTCAACAC 21756 Query 282822 TACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAAT 282876 | | ||||||||||| || ||||| |||| ||||| ||||| |||||||| Sbjct 21755 GATCGTTTTGCCATACTCCAACACAGGAGTAAGTAGTTCCCAAATCGATACCAAT 21701 >seq53 Length=825717 Score = 141 bits (156), Expect = 7e-28 Identities = 233/329 (71%), Gaps = 9/329 (3%) Strand=Plus/Minus Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 |||||||| ||||| || || | ||||| || |||| | ||||| || | ||| Sbjct 738397 TCAAAATCATCACCACCTAAGTGAGTATCACCATTTGTAGATAATACTTCAAATACACCA 738338 Query 282254 TCTTCAAGAGACAA-AAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 282312 ||| | | | ||| || || | |||| || || ||||| | ||| ||| | | | Sbjct 738337 TCTCCTA-ATTCAAGAACAGAGATATCAAAAGTACCTCCACCTAAATCGTAAACA-GCA- 738281 Query 282313 ATTCATT--TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 282370 ||| || || || ||| ||||||| | ||||| |||| |||||||||||||| Sbjct 738280 ATTTTTTGATCATTTCCTT---TTTTATCTAATCCATAAGCAAGTGCAGCAGCAGTTGGC 738224 Query 282371 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 282430 ||||| || || | || ||| ||||||||||| ||| ||| || |||||||| || || Sbjct 738223 TCATTGATGATACGCATAACTTTAAGACCAGCGATTTCTCCAGCTTCTTTAGTAGCCTGA 738164 Query 282431 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCA 282490 | ||| | ||||||||| || |||||||| |||||||| || || |||||| || || Sbjct 738163 CGTTGAGCATCGTTAAAGTAAGCAGGAACTGTAATAACTGCCTCAGTTACTGTTTGACCT 738104 Query 282491 ATATAAGCGCTTGCTGTTTGTTTCATTTT 282519 | ||| | || |||| ||||||||| Sbjct 738103 AAATAGTCTTCAGCAGTTTTTTTCATTTT 738075 >seq1687 Length=123621 Score = 86.0 bits (94), Expect = 5e-11 Identities = 113/155 (73%), Gaps = 4/155 (3%) Strand=Plus/Minus Query 34259 GAAATTTCTACGGAATCTGTTCTCATATAAGTAATATATCCGCCTTCATATAATTTTTGT 34318 |||| | ||| ||||| || | |||||| ||||| | |||| |||||||||| ||||| Sbjct 59915 GAAAGATTTACAGAATCGGTACGCATATAGGTAATTTTACCGCTTTCATATAATCTTTGT 59856 Query 34319 GCTGTTTTCATGGTAGAATCAATA--GACATACCAAATTTTCTGTTGGCTTCTTGTTGCA 34376 || | ||| || | ||| || | ||||| ||| ||| ||||| ||||| | Sbjct 59855 GCAACCTGCATTGTTC--TGGATACGGAGAAACCAAGTTTCCTGGAAGCTTCCTGTTGTA 59798 Query 34377 ATGTAGAAGTAGTAAAGGGAGGAGCCGGAGATCTT 34411 |||||||||||||||| |||| || ||| |||| Sbjct 59797 ATGTAGAAGTAGTAAAAGGAGCTGCAGGATTTCTT 59763 >seq1182 Length=83562 Score = 86.0 bits (94), Expect = 5e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 86113 CCTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAA 86172 |||||||| || ||||| |||||||||||||||||| | ||| | ||||| || Sbjct 39735 CCTAAACCATAGGCAAGGCTTGCTGCAGTTGGTTCATTGACTATACGTAATACATCCAAT 39676 Query 86173 CCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGT 86232 || || | ||| | | |||| | || || || | ||| |||||||||||| || || Sbjct 39675 CCGGCCAGTTTGCCGGCATCACGTGTAGCCTGACGCTGGCTGTCATTAAAATAAGCAGGA 39616 Query 86233 ACAGTAATAACTGCTTTATTAATAGGTTTTTGTAA 86267 |||||||| ||||| |||| ||| ||| ||| Sbjct 39615 ACAGTAATGACTGCCCGGTTAACTGGTGTTTTTAA 39581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739973400352332