Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq126 134 1e-26 seq232 93.3 4e-14 >seq126 Length=461790 Score = 134 bits (148), Expect = 1e-26 Identities = 470/726 (65%), Gaps = 37/726 (5%) Strand=Plus/Plus Query 26805 ATTTTCCCACCACTCTTTGTTATCTACATACCAATCAATGGTTGAATAAAGTTTTTCTTC 26864 ||||| | |||| |||| |||| | |||||||| || ||| | | | |||||| Sbjct 336266 ATTTTGCAACCAATCTTCATTATTAAGATACCAATTTATTGTTTTTTCCAATCCTTCTTC 336325 Query 26865 AAATGTGCCTTTAGCTTTCCACCCTAATTCCTTTTCAATCTTATAAGGATTCACTTCATA 26924 ||| || | || ||||||||||||||| | | ||| || ||| || | | |||| Sbjct 336326 AAAAGTAACAGAAGGTTTCCACCCTAATTCTTGATTAATTTTTGAAGCATCAATTGCATA 336385 Query 26925 TCTTAAATCATGCCCAGGCCTATCTGTAACC-----ATCTCAAT-----GAGGCTACAAG 26974 |||||||||||| ||||| || ||| |||| | | ||| || | | || Sbjct 336386 TCTTAAATCATGACCAGGTCTGTCTTTAACATAAGTAATTAAATTTTGAGAAGTTCCATT 336445 Query 26975 CATCTGTTTCAGATGGATATACCGCATCCATATAATCACAAATCATATAGATTACATCAA 27034 | ||| || | | | ||||||| | ||||| || | || | ||||| Sbjct 336446 C-TCTCTTCCTAACTTTTG------ATCCATAATTTGACAAAGCAACTTGACCAAATCAA 336498 Query 27035 TATTAGTTCTAGGGTTTCTGCTCCCAATATTATATGTCTCTCCAGATTTGCCTTTAGTTA 27094 |||| | | ||| | || |||||||| || || | ||| |||| | | Sbjct 336499 TATTTTTCCATTCGTTAAAACCACCTATATTATAGGTTTCATGATTTTTTCCTTCATGAA 336558 Query 27095 CTACTAGGTGTAATGCCTCTGCGTGATCGTCAACGTATAACCAGTCTCTTACTTGAAGAC 27154 |||| | | ||| ||| ||||| || || | ||||| || | | | || Sbjct 336559 AAACTAAATCAATTGCTATTGCATGATCCTCTACAAACAACCAATCACGAGTATAATTAC 336618 Query 27155 CATTACCATAAACAGGGATTGGTTTATGCATTAAGATATTTGTTATCGTTTTAGGTATTA 27214 ||| ||||||||||| | ||||||| ||| |||||| |||| ||| |||| Sbjct 336619 CATCTCCATAAACAGGTAAAGGTTTATTATTTATGATATTGTTTATAAAAAGAGGAATTA 336678 Query 27215 GTTTTTCTGGATGATGATATGCTCCAAAATTATTTGAACAATTTGTTATAACTGTCGGAA 27274 |||||| ||| |||||||| ||| ||||||||||||||||||||| ||| ||| | Sbjct 336679 ATTTTTCAGGAAAATGATATGAACCATAATTATTTGAACAATTTGTTAAAACATACGGTA 336738 Query 27275 TACCATAAGT---ACGATGCCACGCTCTTACCAAATGATC---GCTTGCAGCTTTAGATG 27328 |||||| || | || | |||||||| |||||||| ||| ||||| || | Sbjct 336739 AACCATATGTTTCTCCAT---AAGCTCTTACAAAATGATCTGAGCT---GGCTTTTGAGG 336792 Query 27329 CAGCATATGGACTACTTGGTTTATAAGGATTCTGTTCTGTAAACGGATAAT-CTCCTTCT 27387 ||| |||||| |||| | ||||||| | ||| |||| ||||| || | || Sbjct 336793 CAGAATATGGTGAGTTTGGATCATAAGGAGTTGTTTCGGTAA----ATAATCCTTCCGCT 336848 Query 27388 TCCAGATCACCATACACTTCATCTGTTGAAATATGATGGAACATTTTAAGATTTGATTTA 27447 | | | ||||| ||||||||||| |||||||| || |||| | | ||| Sbjct 336849 CCTAAAGAGCCATATACTTCATCTGTGCTAATATGATAAAATCTTTTTCCTTCAAAATTA 336908 Query 27448 T-CTCCCATTAA--ACGAACAGCTTCTAGAAGATTAAATGTCCCAACAATATTTGAATTT 27504 | || ||||| | | || | || |||||| | ||||||| || ||||| ||| Sbjct 336909 TCCTTCCATTGATTTTTTGCTGCATTTAAAAGATTCATGGTCCCAATAACATTTGTTTTT 336968 Query 27505 ATAAAA 27510 | |||| Sbjct 336969 ACAAAA 336974 Score = 118 bits (130), Expect = 1e-21 Identities = 366/557 (66%), Gaps = 22/557 (4%) Strand=Plus/Plus Query 26240 ACAGAATTATCGTAAAAGTACAAGCCTGTGATTGCGTAGTTGCtttttggtgtttttggt 26299 ||||||||||| ||||| || || |||| | ||| || || ||||||| ||| Sbjct 306237 ACAGAATTATCATAAAAATATAATCCTGGAACTGCATAATTTGATTTTGGTTCAAGCGGT 306296 Query 26300 ttttCTTCAAT---ACTCACCACTGTACCTTCAGAATCAAACTCAACAACACCAAATCTT 26356 || ||||| || | | | | || |||| ||||| ||||| |||||| ||||| Sbjct 306297 TTCTCTTCTATCGAAATAGCATTTTTATTTTCA---TCAAATTCAACTACACCATATCTT 306353 Query 26357 TCAGGATCATTTACGTGATACCCAAAGATATTAGCTCCACCATTCTTT-TCAATATGTTC 26415 || |||||| || || || |||| | | |||| || |||| || | || Sbjct 306354 TCTGGATCAGAAACATGGTAAGCAAAAACAA---CTCCTCC-TTCTGGATCTGAGTTATC 306409 Query 26416 TTTAGCAGAATCTAAAATGCTACCAAAACTCTGACCAAAGAATAAATTATCACCTAGCAC 26475 ||| ||| || |||| | | | | || ||||| | |||||| |||| || Sbjct 306410 TTTT----AAT---AATTGCTGC--ATATTTGTTCCGAAGAAAATATTATCTCCTAAAAC 306460 Query 26476 AAGTGCTACAGAATCTTCACCAATAAAGTTCTCACCAATAATAAACGCTTCTGCTAAACC 26535 | || || ||| | || ||||| || || ||||||| ||| || | |||||| || Sbjct 306461 TAAAGCCACTTTATCATTCCCTATAAAATTTTCTCCAATAACAAAAGCCTGTGCTAATCC 306520 Query 26536 TTTTGGGCTATCCTGTATTGCATA-CTGTAGGGAAATACCAAAAGAAGAACCATCACCTA 26594 ||||| | |||| |||||| || | | || |||| | | || || || | Sbjct 306521 ATTTGGATTTGGCTGTTCTGCATAACTAAATTTACAT-CCAATTGTACTTCCGTCTCCCA 306579 Query 26595 GAAGATTTACAAAATTAATTTGATCTTCTGGTGTTGTAATTATTAGTATTTCCCTAATTC 26654 ||| ||| ||||| | |||| | || |||| |||||| | || || | |||| Sbjct 306580 AAAGCTTTCTAAAATGAGGAAGATCATGAGGAGTTGAAATTATCAAAATCTCATTTATTC 306639 Query 26655 CAGAAAGCATTAGGACAGAGAGTGGATAATAAATCATAGGTTTATCGTAAATTGGTAATA 26714 | | | ||||| || | ||||||||||||||| ||||||||||||| || | || Sbjct 306640 CTGCCATCATTAAAGTTGATAATGGATAATAAATCATTGGTTTATCGTAAACCGGCATTA 306699 Query 26715 GTTGTTTACTAACCCCTTTAGTAACTGGGTAAAGCCTTGTTCCACTACCACCTGCTAAGA 26774 |||||||||||| || || | ||| | | ||||| ||| ||| || || | | Sbjct 306700 ATTGTTTACTAACAGCTAATGTTAATGGATGTAATCTTGTGCCAGAACCCCCAGCAAGTA 306759 Query 26775 TAATACCTTTCATACTC 26791 |||| ||||||||| || Sbjct 306760 TAATTCCTTTCATATTC 306776 >seq232 Length=384298 Score = 93.3 bits (102), Expect = 4e-14 Identities = 157/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 50356 CTTTGGGAAGTGTTTGGTGGTACTATCAACCGA-AAAGGCTACAAGGTTCTTGATCAGCA 50414 |||||||| || |||||||| || | ||| ||| ||||| | ||| | | | || || Sbjct 85757 CTTTGGGATGTTTTTGGTGGAACGA-CAAACGATAAAGGTTTCAAAGAATTGGTTCCACA 85815 Query 50415 CATCGGTATGATTTATGGTGATTCTATTACTGTTGAACGAGAATACGAGATCTTACGCCG 50474 ||||| |||||||| ||| |||||| || | | ||| | || |||| | Sbjct 85816 AATCGGAGCAATTTATGGCGATAGTATTACCGTAGCAAGAGCAACTGAAATCTGCGAGAG 85875 Query 50475 ACTGAAGAAGAAAGGTTTTGCAGCTTCCAATATTGTATTTGGTGTTGGTAGTTATACTTA 50534 | | || |||||||||||| || | || | || || || |||| || || || Sbjct 85876 ATTAAAAGCGAAAGGTTTTGCTTCTACAAACGTGGTTTTAGGAATTGGATCTTTCACGTA 85935 Query 50535 TCAGTTCAATACACGAGATACTTTTGGTTTTGCTGTTAAAGCAAC 50579 ||| | ||||||||| ||||||||||||||||| | |||||||| Sbjct 85936 TCAATACAATACACGTGATACTTTTGGTTTTGCAATGAAAGCAAC 85980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475350872379840