Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq410 228 3e-54 seq93 223 1e-52 seq53 113 1e-19 >seq410 Length=67928 Score = 228 bits (252), Expect = 3e-54 Identities = 296/407 (73%), Gaps = 4/407 (1%) Strand=Plus/Minus Query 188785 ACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATGTACCTCTA 188844 ||||| | || |||||| | || || | ||| | || | || |||||||| ||| | Sbjct 16953 ACTGGAACTGGCAAAACACTTTTGGCAAAGACAATTGCAAAAATATTACATGTTCCTTTT 16894 Query 188845 GCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAAC 188904 ||| | |||||| || ||||||||| || |||||||| |||||||||||||||| Sbjct 16893 TGTATTTGTGATGCTACAGTTTTAACAGAGGCAGGTTATGTTGGTGAAGATGTGGAAA-- 16836 Query 188905 GTAT--TGCTTCGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAACGTGGAA 188962 |||| | |||||| | || || || ||||| ||| | | | || |||||||||| Sbjct 16835 GTATCCTAACCCGTTTACTGCAGGCGGCCGATTATGATGTGGCTTCTGCCGAACGTGGAA 16776 Query 188963 TTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCCATTACCC 189022 |||| || |||||||| || |||||| |||| | ||| || | | || |||||| Sbjct 16775 TTGTTTACATCGATGAGGTTGATAAAGTTGCACGTAAAAGCGATAATCCTTCAATTACCA 16716 Query 189023 GAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTG 189082 | |||||||| || ||||| || |||||||| || | || ||| ||||||||||||| | Sbjct 16715 GGGATGTATCCGGAGAAGGTGTTCAGCAAGCGCTACTTAAGATCCTTGAAGGTACAGTGG 16656 Query 189083 CGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGAAATAGATA 189142 ||| || |||||||| || || ||||| || ||| | || ||||| || | ||| Sbjct 16655 TGAATGTCCCTCCTCAGGGCGGACGTAAGCATCCTGATCAGAAAATGATTCCTGTGAATA 16596 Query 189143 CAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAA 189189 ||| ||| || || |||||| ||| || || |||||||| ||||| Sbjct 16595 CAAATAACATTTTATTTATTTGTGGAGGTGCATTTGATGGGATTGAA 16549 >seq93 Length=584700 Score = 223 bits (246), Expect = 1e-52 Identities = 317/446 (71%), Gaps = 0/446 (0%) Strand=Plus/Plus Query 188737 GATGATGGAGTAAAGATCAAAAAATCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGT 188796 || |||| |||| |||| ||||| |||| || | | || || | || || | || Sbjct 562555 GACGATGAAGTAGAGATTGAAAAAAGTAATATTATAATGGTAGGACAAACCGGAACCGGA 562614 Query 188797 AAAACATTATTTGCTCAAACATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGAT 188856 ||||||||| | || |||| | || | |||||| |||| ||| | |||||| ||| Sbjct 562615 AAAACATTAGTAGCAAAAACTATCGCAAAAATGTTAGATGTTCCTTTGGCTATCGTAGAT 562674 Query 188857 GCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGT 188916 |||||| | |||||||| |||||||| || |||||||| |||| | || |||| Sbjct 562675 GCAACTGTACTTACAGAAGCAGGTTATGTGGGAGAAGATGTTGAAAGTATTTTAACTCGT 562734 Query 188917 TTAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGAT 188976 | | ||||| || ||||||||| | | ||| ||| | |||||||||| ||| || Sbjct 562735 CTTTTACAAGCTGCAGATTACGATGTAACAAAAGCAGAAAGAGGAATTGTATTTATTGAC 562794 Query 188977 GAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGC 189036 ||| ||||||||||||| | ||| || | | | || || || |||||||| ||||| Sbjct 562795 GAAATAGATAAAATTGCCCGCAAAAGCGATAACCCGTCTATCACACGAGATGTTTCTGGT 562854 Query 189037 GAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCT 189096 ||||| ||||| || || ||||||||| | | ||||| ||||||| || || || || Sbjct 562855 GAAGGTGTACAACAGGCATTATTAAAATTATTGGAAGGAACAGTTGTAAACGTACCGCCA 562914 Query 189097 CAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTG 189156 |||| || ||||||||||| | ||| || | | ||| || | || ||||| || Sbjct 562915 AAAGGAGGACGTAAACACCCAGATCAAAAATTTGTCGAAGTAAACACTCAAAATATTCTG 562974 Query 189157 TTTATTCTTGGTGGAGCGTTTGATGG 189182 |||||| || || || |||||||| Sbjct 562975 TTTATTGCAGGAGGTGCTTTTGATGG 563000 >seq53 Length=825717 Score = 113 bits (124), Expect = 1e-19 Identities = 380/582 (65%), Gaps = 31/582 (5%) Strand=Plus/Plus Query 182240 GAGCTTTACCTGATGCAAGAGACGGATTAAAACCATCACAACGTCGAATTTTATATGCTT 182299 |||| | ||||||| ||||| || || |||||| ||| || || || | || | Sbjct 692409 GAGCGCTTCCTGATGTTAGAGATGGCTTGAAACCAGTACACCGAAGAGTTCTTTACGGAA 692468 Query 182300 TATGGGATTTAGGAATGCTACCTCATAAAC--CATATCGAAAATCAGCAACAGTGAATGG 182357 | | |||||||| || || ||| | | | || |||||| |||| | | || Sbjct 692469 TGTATGATTTAGG--TGTAACTTCAAGATCGGCCCATAAAAAATCTGCAAGAATCGTGGG 692526 Query 182358 CCACGTAATGGGTAATTTCCATCCACATGGTGATACTT------ATGGTGTAATGGTAAA 182411 | || ||||||| | ||| || || || ||||||| ||| | ||||||| Sbjct 692527 AGAGGTTCTGGGTAAGTACCACCCGCACGGAGATACTTCTGTATATGACGCAATGGTACG 692586 Query 182412 TATGACAAATGAATTAAGTATTCGATATCCAGTAGTTGATGGTCAGGGTAACTTTGGTAA 182471 |||| | | |||| ||||| || ||| | |||| ||||||||||||||||||||| Sbjct 692587 TATGGCGCAGGAATGGAGTATGCGTTATTTATTAGTGGATGGTCAGGGTAACTTTGGT-- 692644 Query 182472 CCCATTAGATGGTGATGGTGCAGCAGCGATGCGTTATACTGAAGCACGTTT-----AGAT 182526 | | ||||| || | | |||||||||||||||||||| || | | |||| Sbjct 692645 -TCTGTTGATGGCGACAGCCCTGCAGCGATGCGTTATACTGAGGCCAGAATGCGCAAGAT 692703 Query 182527 AATCTTGGAATGTTAATGCTACAAGATGTTGACAAAAAAGTTGTTGACTTCCAACCTAAC 182586 |||| || ||| || |||| | || ||| || ||||| || ||| ||| Sbjct 692704 -ATCTGAAGATATTATGGC----AGATATCGAAAAAGAAACAGTTGATTTTCAA-TTAA- 692756 Query 182587 TATTCTGAAGAAAC---AGAAGAACCAGTGATTTTACCAGCAGGGATTCCATACTTACTT 182643 | | ||| || || | | |||||| | | || || | ||||| |||| || Sbjct 692757 -ACTTTGACGATACATTATATGAACCAAAAGTAATGCCTACAAGAGTTCCA-ACTTTATT 692814 Query 182644 A-TAAATGGAGCAACTGGTATTGCAACTGGTTATACTACTGACATACCTTCCCATAATTT 182702 | |||| ||||||||||||||||| |||| | || | || || | || ||||| Sbjct 692815 AGTAAACGGAGCAACTGGTATTGCGGTTGGTATGGCAACGAATATGCCGCCACACAATTT 692874 Query 182703 AAGCGAAGTAATTGATGGTATCTTAAATTTAATTCAAAATCCTGAAATTGATATTCATGG 182762 || || || || |||||| ||| || || | ||| ||| |||| || | | Sbjct 692875 AACAGAGGTTATCAATGGTACATTAGCTTACCTTGATAATAATGATGTTGAAGTTGACGA 692934 Query 182763 GTTAATGAAACACATTAAAGGTCCTGATTTACCTACTGGCGG 182804 ||||||| || ||||||| ||| ||||| || || || || Sbjct 692935 ATTAATGACGCATATTAAAGCTCCGGATTTTCCAACCGGTGG 692976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591637456017536