Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq8561 156 3e-33 seq236 102 6e-17 seq1743 96.9 2e-15 >seq8561 Length=961 Score = 156 bits (172), Expect = 3e-33 Identities = 261/369 (71%), Gaps = 9/369 (2%) Strand=Plus/Minus Query 94405 ACGTTGTTGACCGCGGCCTCGATCTCCCCATCGGAGACGAACGCGCCCTGTATCCGGATG 94464 |||| ||||| | || ||||||||| ||| ||| |||||||||| | |||| Sbjct 755 ACGTGCTTGACGACCGCGTCGATCTCCTTCTCGTCGACCCACGCGCCCTGCAGACGGAAC 696 Query 94465 GCGCTGCG-CGCCCCCACCGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGC 94523 | ||| || || |||| |||| ||| | | |||||||| || ||||||| || || Sbjct 695 G-GCTTCGACGAGCCCATCGGCGAGAACAGCGCGTCACCCTGACCGATGAGCTTGTCCGC 637 Query 94524 TCCGCCCTCGTCCAGGATCACCCGGCTATCGGTGAGGGAC-GCTGT-GGCGAACGACAGC 94581 ||| || ||||| || ||||| ||||||| || | || |||||| | ||| Sbjct 636 CCCGGGGCTATCGAGGATGACGCGGCTGTCGGTGAC--ACTGGTGACGGCGAAGGCCAGT 579 Query 94582 CGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTC 94641 || || || ||||| ||||||||| || || || || || ||| |||||||| ||| Sbjct 578 CGAGACGGGACGTTCGCCTTGATGAGTCCGGTGACGACGTCGACGCTCGGCCGCTGGGTC 519 Query 94642 GCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCC 94701 || |||||||| || ||||||| || ||||| ||||| |||||| || || | || Sbjct 518 GCGAGGACGAGGTGGATGCCGGAGGCTCGCGCGAGCTGCGTGATGCGCACGATCGAGTCC 459 Query 94702 TCAACCTCTTTCTTGTAGCCACCCATCATGAGGTCCGCGAGTTCATCCACCACTACCACG 94761 || || || | | || ||| ||||||||||| ||||| || || ||||| |||| | Sbjct 458 TCCACGTCG--CGAGGGGCGACC-ATCATGAGGTCGGCGAGCTCGTCGACCACGACCAGG 402 Query 94762 ATGTAGGGG 94770 | ||| ||| Sbjct 401 AGGTACGGG 393 Score = 82.4 bits (90), Expect = 5e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 94998 CATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATGCGG 95057 ||| ||||| | |||||| ||||| || || ||||| | || |||||||| |||||||| Sbjct 105 CATGGAGTTCACGAAGCTCGACTTACCGGAGCCGGTGGAACCTGCCACCAGGAGATGCGG 46 Query 95058 CATCTTGGCCAGGTTCAGGGAGACGTCCTTACCCTCGACGTCCTT 95102 |||||| || |||||| | |||| || || |||||||||| Sbjct 45 CATCTTCGCGAGGTTCGCGATGACGATGTTGCCGCCGACGTCCTT 1 >seq236 Length=280360 Score = 102 bits (112), Expect = 6e-17 Identities = 225/331 (68%), Gaps = 10/331 (3%) Strand=Plus/Plus Query 94788 GTGGCGCACGCCAGCCTCCTGCATCTGCCGGTATCGGTCGTCCATCTCT---ACGGTGAG 94844 || ||||||||| ||| ||||| ||||| ||||| |||||||| ||||| Sbjct 83377 GTTGCGCACGCCGACCTTGGACATCTTGCGGTAGCGGTCTTCCATCTCCTTGACGGT--- 83433 Query 94845 CCACCGCAGCGTTTTCACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGG 94904 ||| ||||| | || |||| | | || || || |||||| ||| || || || Sbjct 83434 CCATTTCAGCGCTACGACGGCCTTCTTCGGATCGGTCACGACGGGCGTGAGCAGATGCGG 83493 Query 94905 GATACCGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACCC 94963 || |||| || | || || | ||| || || ||||||||||| || | | Sbjct 83494 AATGCCGTCATAGATCGACAGTTCCAG-CATCTTCGGATCGATCATGATCAGGCGGCACT 83552 Query 94964 GATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGC 95023 | || |||||| ||||| |||||||| | | ||| | ||||||| ||| || | Sbjct 83553 GTTCCGGGGTCATGCGGTAAAGCAGCGACAGGATCATGGTGTTGATGGCAACGGATTTAC 83612 Query 95024 CCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTGGCCAGGTTCAGGGA-GACG 95082 |||| ||||| | || || |||||||||||||||||||| |||| | || | || ||| Sbjct 83613 CCGAGCCGGTGGTACCTGCAACCAGCAGATGCGGCATCTTCGCCA-GATCGGCGATGACC 83671 Query 95083 TCCTTACCCTCGACGTCCTTGCCCACTGCCA 95113 ||| || | || | |||||||| |||| Sbjct 83672 GCCTCGCCATTGATGGTCTTGCCCAGCGCCA 83702 >seq1743 Length=15357 Score = 96.9 bits (106), Expect = 2e-15 Identities = 203/294 (69%), Gaps = 13/294 (4%) Strand=Plus/Minus Query 94791 GCGCACGCC-AGCCTCCTG-CATCTGCCGGTATCGGTCGTCCATCTC---TACGGTGAGC 94845 ||||||||| ||| | || ||||| |||||| ||||| ||||| || ||| | | Sbjct 1147 GCGCACGCCCAGCTT--TGACATCTTCCGGTAACGGTCTTCCATTTCGCGTACCGC---C 1093 Query 94846 CACCGCAGCGTTTTCACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGGG 94905 ||| ||||| | ||||||| | | || || || || || || ||||| || Sbjct 1092 CACTTCAGCGCCATGACCGCCTTTTTCGGGTCGGTCACAACAGGGGTAAGCAGGTGCGGA 1033 Query 94906 ATACCGTTGTACGGGGTGAGCTCGACACATTTGGGGTCGATCATGATGAGTTTGACCCGA 94965 ||||||| || | || || | ||||||||||| |||||| || | | Sbjct 1032 ATACCGTCATAGATCGACAGTTCTAGCATTTTGGGGTCGACCATGATCAGGCGGCACTCT 973 Query 94966 TCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGAT-GAAGCTGGACTTGCC 95024 || || ||| |||||| ||||| || | | ||| | |||||| | | | | ||||||| Sbjct 972 TCCGGCGTCAGCCGGTAAAGCAGTGACAGGATCATGGTGTTGATCGCAACCG-ACTTGCC 914 Query 95025 CGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTGGCCAGGTTCAGGGA 95078 ||| || || | || || ||||||||||||||||||||||| | |||||| || Sbjct 913 CGAACCCGTTGTACCGGCAACCAGCAGATGCGGCATCTTGGCGA-GTTCAGCGA 861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340066128505376