Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_024365.1 Length=51090 Score E Sequences producing significant alignments: (Bits) Value seq8662 206 9e-49 seq5250 127 7e-25 seq5417 95.1 4e-15 >seq8662 Length=221 Score = 206 bits (228), Expect = 9e-49 Identities = 180/221 (81%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 27379 ACCTTTGGCATTTCCTTGAGGCGCTTCAGGTAATCGCGTCCCGG-GTCTTCTACAGCTTT 27437 ||||| |||||||||||||||||||||||||||||||| || || |||| | || || || Sbjct 221 ACCTTCGGCATTTCCTTGAGGCGCTTCAGGTAATCGCGGCCGGGTGTCT-CGACTGCCTT 163 Query 27438 TTTCGACTTACTGACCTTGTTGGCCAGAGAAGCGATGCGGGCACGACCTTTTGCTGTTGT 27497 ||| ||||| || ||| | ||||| || || ||||| || |||||||| | || || Sbjct 162 TTTGGACTTGCTTACCGTTGCGGCCAAGGATGCAATGCGAGCTCGACCTTTCACGGTGGT 103 Query 27498 CAGGTCCGGAACTTCGGCAGTTACCTCGGCCGTGACAGCCTCGAGAAACTGGTTCAGACC 27557 |||||| || || ||||| ||||| |||||| | || || |||| |||||| |||| || Sbjct 102 CAGGTCGGGCACCTCGGCGGTTACTTCGGCCTTCACCGCGTCGAAGAACTGGCTCAGGCC 43 Query 27558 GCCAGTGACGTAGATGGCCGGCGCGTTGTCGGCGCTGATGT 27598 ||| | |||||| |||||||||||||||||||||||||||| Sbjct 42 GCCGGCGACGTAAATGGCCGGCGCGTTGTCGGCGCTGATGT 2 >seq5250 Length=777 Score = 127 bits (140), Expect = 7e-25 Identities = 172/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 1641 GCAACAGCAGAGCTTTACCAGCGGATCGCGACCAATCAGAAAGAGCTGAAACTGACGGGC 1700 || || || || ||||||||||| ||||||| || ||| | | |||||| ||| | ||| Sbjct 322 GCGACGGCCGAACTTTACCAGCGAATCGCGATGAACCAGGAGGTGCTGAAGCTGTCCGGC 381 Query 1701 GAGGGAGTGGCAGGAGTAGTCGGAACTATCAGCAAGACCCTGGCTATCTCTGGAGCTTCA 1760 | | | || |||| |||| || |||||||| || ||| ||| || | | Sbjct 382 GCTGATCTCGCCCGAGTCGTCGAGACCATCAGCAAAACGATGGTGATCAGCGGCACCACG 441 Query 1761 GCTGCATCCGCTAACGCAGCGCTGATCCAGCTTGGCCAAGCGTTTGCTTCTGGAACTTTG 1820 || ||| || |||| || || | ||||| |||||||| ||||| ||||| || | Sbjct 442 GCGGCAGGTGCCGACGCTGCTTTGGTGCAGCTCGGCCAAGCCTTTGCCTCTGGCACCCTC 501 Query 1821 CGTGGCGAAGAGCTGAACAGCGTCATGGAGCAGGCTCCTGCATTGGCCCAGGCAATTGCG 1880 || ||||||||||||||| ||| |||||||||||||| || | || ||||| || ||| Sbjct 502 CGAGGCGAAGAGCTGAACTCCGTGATGGAGCAGGCTCCGGCGCTTGCACAGGCCATCGCG 561 >seq5417 Length=424 Score = 95.1 bits (104), Expect = 4e-15 Identities = 54/55 (98%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 15660 ATGGGGTGCTAGGGGTCGAGTGTTCGAATCACTCCGTCCCGACCATATAATTCAA 15714 |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 74 ATGGGGTGCTAGGGGTCGAGTGTTCGAATCACTCCGTCCCGACCATATAATTTAA 20 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163340439241168