Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq444 141 2e-28 seq1158 138 2e-27 >seq444 Length=38654 Score = 141 bits (156), Expect = 2e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| ||||| ||||| || || || || || || ||||| | Sbjct 5045 TACCACCACGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGG 4986 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||| || || ||||| || || |||||||| || | |||||| || || | Sbjct 4985 AGAGAGTACGACCATCCTCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTG 4926 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||| ||||| ||||| | || || || || || ||||| | || | Sbjct 4925 GAATTCCCTCCTTGTCTTGGATCTTGGTCTTGACGTTCTCGATAGTATCGGAACCCTCGA 4866 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 | ||||| || || ||||||||||||| || || ||||| || |||||| || Sbjct 4865 CCTCCAAGGTAATAGTCTTGCCTGTCAGAGTTTTAACAAAGATTTGCATTGTT 4813 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| | | ||| ||||| ||||| ||||| || || || || || || || ||||| Sbjct 5728 ACCTCCACGAAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGA 5669 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | ||| || || ||||| || ||||||||||| || | |||||| || || || Sbjct 5668 AAGGGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGG 5609 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||| ||||||||||| | || ||||| ||||| || ||| | || || Sbjct 5608 GATACCCTCCTTGTCTTGAATCTTGGTCTTGACATTCTCAATGGTGTCAGAACCCTCGAC 5549 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||| || ||||| ||||| || || || ||||| Sbjct 5548 CTCGAGAGTGATGGTCTTACCAGTCAAGGTCTTGACGAAGATTTGCAT 5501 >seq1158 Length=25781 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| ||||| ||||| || || || || || || || || | Sbjct 9707 TACCACCACGGAGACGGAGAACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGG 9766 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| || || ||||| || ||||||||||| || | |||||| || || | Sbjct 9767 AAAGGGTGCGACCATCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTG 9826 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||||||||| ||||| | || || || || || ||||| | || | Sbjct 9827 GGATACCCTCCTTATCTTGGATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCAA 9886 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| |||| ||||||||||| || ||||| Sbjct 9887 CCTCCAAGGTGATGGTCTTGCCAGTCAGTGTCTTTACAAAGATTTGCAT 9935 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| || || || || || || || || ||||| | Sbjct 9251 TACCACCACGGAGACGGAGCACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAATCGG 9310 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||| || || ||||| || || || ||||| || | ||||||||| || | Sbjct 9311 AGAGAGTGCGACCATCCTCGAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGATCGGGTG 9370 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||||||||||||||| | || || || || || ||||| | || | Sbjct 9371 GGATACCCTCCTTATCTTGAATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCGA 9430 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || ||||| || || | ||||| || || |||||||| Sbjct 9431 CCTCCAAGGTAATTGTCTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 9479 Score = 123 bits (136), Expect = 5e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | || ||||| || || || || || || || || || || | | ||| Sbjct 9036 ACGGAGGACGAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTACGACC 9095 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || ||||| || ||||||||||| || | ||||||||| || || || || ||||| Sbjct 9096 GTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGTGGGATACCCTCCTT 9155 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| | || || || || || |||||| | || || || | || || Sbjct 9156 GTCTTGAATCTTGGTCTTGACGTTCTCGATGGTATCAGAACCCTCAACCTCAAGGGTGAT 9215 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| ||||| ||||| || ||||| Sbjct 9216 GGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 9251 Score = 102 bits (112), Expect = 2e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| || || | || || || || || || || ||||| || || | Sbjct 9479 TACCTCCACGGAGACGAAGGACGAGATGGAGGGTGGACTCCTTTTGAATATTGTAGTCGG 9538 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||| || || || || || ||||| ||||| | | |||||| || || | Sbjct 9539 AGAGAGTACGACCATCCTCGAGCTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTG 9598 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||||||||| | || || || || || || ||| | || | Sbjct 9599 GAATACCCTCCTTGTCTTGAATCTTGGTCTTGACGTTCTCGATGGTGTCAGAACCCTCAA 9658 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || ||||| || || | ||||| ||||| || ||||| Sbjct 9659 CCTCGAGAGTGATGGTCTTACCGGTGAGGGTCTTAACAAAAATTTGCAT 9707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981658858976498