Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq3418 233 5e-57 seq3006 197 4e-46 seq12163 196 1e-45 seq9435 188 2e-43 seq1269 149 2e-31 seq3688 95.1 3e-15 seq5091 86.0 2e-12 seq8696 82.4 2e-11 >seq3418 Length=506 Score = 233 bits (258), Expect = 5e-57 Identities = 278/373 (75%), Gaps = 8/373 (2%) Strand=Plus/Minus Query 7820 CGGGATGATGCCCATGAGCTGCGGCGGCACGCGGTGCGCGGCGAGTTGGTCGTCGCGCGT 7879 ||| | |||||| | ||||||||||||||||| |||| || || |||||||||||| Sbjct 497 CGGCACGATGCCAAGCAGCTGCGGCGGCACGCGCAGCGCCGCCAGCATGTCGTCGCGCGT 438 Query 7880 GACGTTTTTGACGTTCCAGAACTCGTCCTTCGCGGCCACCTCGGACACCGGTAGCAGCTG 7939 ||| |||| ||| |||||| ||||| || ||||||||| |||||| | | ||| Sbjct 437 CACGCCCTTGATGTTGGCGAACTCATCCTTGGCCGCCACCTCGCTCACCGGGATGATCTG 378 Query 7940 GATCCCGTCCTTCTTGCCGTTAGGCGCGTACATGAACAGGTTGCGGAAATTGCCCGGCCC 7999 | ||||| ||||||||||| |||| | || ||||||||| ||||| |||||||| || Sbjct 377 CAGACCGTCTTTCTTGCCGTTGGGCGAATGCACGAACAGGTTCCGGAAGTTGCCCGGACC 318 Query 8000 -CTTGGCACTCTTCATCGCCTCGCGCAG---CGTGTCGACATCCTCTTGCCTCTGCGCCG 8055 | || | | ||| | |||||||||||| || || | | || | ||| | Sbjct 317 ACGTGCCGC-CTTGAGCGCCTCGCGCAGGCCGGTTACGTCGGACGATTCCGCCTG---GG 262 Query 8056 CGTCGGTCATGTACAGGATGAAACCGGCGTGGGAGCCGTTTTTGTAGTACCGGCGGCGGA 8115 ||||||| ||| |||||||| |||||||| |||||||| ||||||||| ||| |||| Sbjct 261 AATCGGTCAGGTAGAGGATGAAGCCGGCGTGCGAGCCGTTGTTGTAGTACTTGCGCCGGA 202 Query 8116 ACAGCGTGGCCGATTCGTTCAACCATGTGGCGTTCAACGCGGACAGGTATTCCGGCAGGC 8175 ||||||||||||| ||||| | | | ||| | || || | || | || ||||||| Sbjct 201 ACAGCGTGGCCGACTCGTTGAGCAGCGCGGCCTGCACGGCCGGCATCCACTCGGGCAGGC 142 Query 8176 CGTACACCTCCTG 8188 ||||||||||||| Sbjct 141 CGTACACCTCCTG 129 >seq3006 Length=629 Score = 197 bits (218), Expect = 4e-46 Identities = 337/493 (68%), Gaps = 14/493 (3%) Strand=Plus/Plus Query 24988 GGCTGGCACAAGACGCTTTCCAACGTGGCTGTGGGTGGCGTGACTGGCCTGTCGCGCGAC 25047 |||||||| ||| |||| ||||||||||| || | |||||||| ||| | || ||| Sbjct 21 GGCTGGCATAAGTCGCTGTCCAACGTGGCCGTAGCCGGCGTGACCGGCATCAGCCGGGAC 80 Query 25048 GTTTTCTGGGACCTCCAGGACCCGGCGACCGACGCGGGCTACCTGAACGCCAACGAGGTG 25107 || |||||||| ||||| |||||||||||||| ||| || || ||| ||| | Sbjct 81 GTCCATTGGGACCTGCAGGATCCGGCGACCGACGCCGGCATGCTCAATGCCGCCGATATC 140 Query 25108 ACCACGCTGGTTCACCGCGACGGCTACCGCTTCTGGGGCTCGCGCACGTGCAGCGCGGAT 25167 ||||||||| | || | |||| ||| |||||||| |||||||| ||||||| || Sbjct 141 ACCACGCTGATCAACTCCAACGGGTACAAGTTCTGGGGATCGCGCACCTGCAGCGATGAG 200 Query 25168 CCGCTGTTCGCCTTCGAGAACTACACCCGCACCGCCCAGGTGCTGGCCGACACCATGGCG 25227 |||||||| |||||||||| || ||||||||| || ||| | |||||||||||||| || Sbjct 201 CCGCTGTTTGCCTTCGAGACCTCCACCCGCACGGCGCAGATCCTGGCCGACACCATCGCC 260 Query 25228 GAAGCCCACATGTGGGCAA--ACGATCTGCCGATGACGCCGACGCTGGTCCGCGATCTGC 25285 || | | || ||| | | ||| |||| || || ||||||| || Sbjct 261 GAGG--CGCAGTTGGTCTACGTCGACAAGCCGCTGCACCCCTCGCTGGTGCGNNNNNNNN 318 Query 25286 TGGAGGGCATCAACGCCAAGCTGCGCATGCTGACCCGCAACGGCTACCTGCTGGGCGGCG 25345 | |||| |||| | ||| |||||||| || | | Sbjct 319 NNNNNNNNNNNNNNNTTA----GCGCGAGCTGGTGAACGCCGGATACCTGCTCGGGGCCA 374 Query 25346 CCGCGTGGTTCGACCCGGAAGCCAACACCAAGGACACGCTGAAGGCC---GGCCAGCTCG 25402 | || |||| |||| || ||||| | | ||||| | | || || | || | Sbjct 375 CGGCCTGGTACGACGAGGGCGCCAA---CCTGCCCACGCAGCTGTCCAGTGGTCGCCTGG 431 Query 25403 CCATCGACTACGACTACACGCCCGTCCCGCCGCTGGAAGACCTCACGTTCCGCCAGCGCA 25462 ||||||||| ||||||||| || || |||||||||||| |||| | | |||||||| Sbjct 432 CCATCGACTTCGACTACACCCCGGTGCCGCCGCTGGAAAACCTGCTGCTGAACCAGCGCA 491 Query 25463 TCACCGACCGCTA 25475 ||||||||||||| Sbjct 492 TCACCGACCGCTA 504 >seq12163 Length=619 Score = 196 bits (216), Expect = 1e-45 Identities = 357/522 (68%), Gaps = 21/522 (4%) Strand=Plus/Plus Query 9251 GGGTCGTAGCCGACCCACACCGGCCGGTTGCCGAACGGCCGCGGCGCGAACGGCCGGAAG 9310 |||||||| || | |||||||| |||| ||| | || ||| ||||| || | ||| Sbjct 115 GGGTCGTACCCAATCCACACCGCGCGGTCGCCATATGGGCGCATGGCGAAGGGGCTGAAC 174 Query 9311 TCCTC---CCATACTTCCCAGGTGTCCACCATCCCGCGCATG-AGCATCGAGAGCGGAAA 9366 || | ||| | ||||| |||||||| | | || || ||||||| ||||| || Sbjct 175 TCGCCGGCCCACTCCACCCAGCTGTCCACC-TGGCACGGCTGCAGCATCGTCAGCGGGAA 233 Query 9367 CACGGACGCGTTGTCGTCGATGAACGCGCACATCAGCAGGTTGGCGAAATCGAGTTCGCT 9426 |||| ||| ||||||| | |||| |||||||||||||||||||||| || |||| Sbjct 234 CACGCTGGCGCTGTCGTCCACGAACTCGCACATCAGCAGGTTGGCGAATTCCTCGGCGCT 293 Query 9427 GTACTCCAGCCGCAACTGGTCGATGTCGAACAGGTTGCAGCCGCCGCGCAGCGCGTCCTC 9486 || || || |||||||| | ||| || | | |||||| Sbjct 294 GTNN-----CCACA-----------TCGAACAGATCGCACCCTCGGTCGGCCGCGTCGAG 337 Query 9487 TACCGTCACGATCTGGCGCCACTGACCGTCAGCGCAGCGCATGCCGTTGCGCAGCGCGGT 9546 || || |||||||| ||||| | |||| ||||||| ||| ||| |||| | Sbjct 338 CACTGTGACGATCTGCCGCCAGATAGCGTCCTCGCAGCGTCGGCCACTGCCCAGCCGGCC 397 Query 9547 GTGGCTCACGTCGATCTTGACCTGTTTGTCCTTGGCCTTGCCGCGGTTGAACAGTGCGCC 9606 |||||| || |||||| ||||| | | | | |||||| |||||| | |||| Sbjct 398 GTGGCTGACATCGATCGATACCTGCTGGGAGGTCGGCTTGCCCTTGTTGAAGCGCTCGCC 457 Query 9607 GGACCAGAACGGGTAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGTACGTTTGCCG 9666 | |||||| |||||| || |||| || | |||| |||||| |||||| || | || Sbjct 458 TGTCCAGAAATCGTAGGCTTCGTGCGCCATGGTGGAAGGCGTGCTGAAGTAGGTCTTGCG 517 Query 9667 CCAGTGCTTGTGGATCGCCATGCCGGACGCGACCTTGCGCAGTTCCTGGAAGCGCGGCAC 9726 ||| | |||||| |||||||||||| ||||||||| ||| | | ||||| Sbjct 518 CCATTTCTTGTGCATCGCCATGCCGCTGGCGACCTTGTTCAGCTGGTTGAAGCCGTAGGT 577 Query 9727 CCAGAAGTACTCGTCGAAGTACAGGTTGCCGTGGTAGCTCTG 9768 ||||||| | ||||||||||| | || |||||||||| ||| Sbjct 578 CCAGAAGAATTCGTCGAAGTAGAAATTCCCGTGGTAGCCCTG 619 >seq9435 Length=520 Score = 188 bits (208), Expect = 2e-43 Identities = 299/424 (71%), Gaps = 10/424 (2%) Strand=Plus/Plus Query 12127 CGGCGCGGGTGGGGACTACGGCAACCTGGACGCCCTGGTGTTCGACGTCGTGAACCAGCT 12186 |||||| || | |||||||| |||||||||||| ||||| | || || ||| | || Sbjct 73 CGGCGCCGGCGCGGACTACGCCAACCTGGACGCGCTGGTTATGGATGTGGTGTCCACCCT 132 Query 12187 GGTCGAGCCGTGGTACGCCGAGGATCCGG---AGCTGGTCGTGCTGTGTGGTCGCAACCT 12243 | ||||||||||| || ||||||||| | ||||| | ||| || |||||||| Sbjct 133 GATCGAGCCGTGGCACCAGCAGGATCCGGGCTTGGTGGTCATCCTG---GGCCGCAACCT 189 Query 12244 GCTGGCCGACAAGTACTTCCCGCTGGTGAACAAAGACCGCGACCCGGTCCAGCAGATCGC 12303 | || ||||||||||||||| | | ||||| |||| | ||| | ||||| | || Sbjct 190 GGTGCACGACAAGTACTTCCCCATCATCAACAAGGACCTGGCGCCGACCGAGCAGCTGGC 249 Query 12304 GGCCGACCTCATCATCAGCCAGAAGCGCATCGGCAACCTGCAGGCGGTGCGCGTGCCGTA 12363 || || || | | || ||||||||||| ||||||| ||||| |||||| | Sbjct 250 CGCGGATCTGGTGCTGGGCACTAAGCGCATCGGTGGCCTGCAGCCGGTGATCGTGCCTTT 309 Query 12364 CTTCCCGGCGAATGGCCTGCTGGTGACGCGCCTGGACAACCTGTCCATCTACTACCAGGA 12423 | ||||||| || | |||| |||| || |||||||| ||||| ||||||| ||| Sbjct 310 CGTCCCGGCCAACGCCCTGATGGTCACCTCGCTGGACAATCTGTCGATCTACTGGCAGAT 369 Query 12424 GAACGCGCGCCGTCGCACGATCCTGGACAACGCGAAGCGCGATCGCATCGAGAACTACGA 12483 ||| ||||| || || | || | || || | ||| | | ||||| ||| Sbjct 370 CGACGGCCGCCGCCGTTACCTCATCGAGCAGCCGCAGAAGAACCGCGTGGCGAACTTCGA 429 Query 12484 GTCGAGCAACGACGCGTACGTGATCGAAGAC--CTGGCGTGCGCAGCCATGGCCGAGAAC 12541 |||| |||||||| |||||| |||||||| | | |||| || ||| ||| ||||||| Sbjct 430 GTCGTCCAACGACGACTACGTGGTCGAAGACTACGGCCGTG-GC-GCCCTGGTCGAGAAC 487 Query 12542 ATCG 12545 |||| Sbjct 488 ATCG 491 >seq1269 Length=1066 Score = 149 bits (164), Expect = 2e-31 Identities = 321/478 (67%), Gaps = 24/478 (5%) Strand=Plus/Plus Query 10669 CCAAGTTCTTCCGCATCGCCACCGAAGGCGCAACGAGCGACGGCCGCGTGATCGACCGCG 10728 || |||||||||| | || ||||||||| || | ||| |||||||||||||| ||| Sbjct 539 CCCAGTTCTTCCGTGTGGCTGTCGAAGGCGCCACCACCGATGGCCGCGTGATCGAGCGCC 598 Query 10729 AAACGCTGATC---GAGATGGCAAGCAACTACGACCCCAAGGTCTACACCGCGCGCGTCA 10785 | || |||| || ||||| | ||||||||| |||||||| ||| || || Sbjct 599 A---GCAGATCGTGGAAATGGCTGAAACCTACGACCCGGAGGTCTACGGCGCCCGGATCT 655 Query 10786 ACCTGGAGCACATCCGCGGCTACGACCCGGCCGGCCCGTTCAAGGCCTACGGCGACGTGA 10845 |||||||| |||| || |||| | |||||||| ||||||||||||||| Sbjct 656 GGATGGAGCACTACCGCAGCGCGCTGCCGGACAGCCCGTTCCGCGCCTACGGCGACGTGG 715 Query 10846 CCGCGCTGAAGACCGAGGAACAGGA------CGGC------AAGCTCGGTTTGTTCGCGC 10893 |||| | ||| |||| ||| || |||| ||| | | ||||||| | Sbjct 716 TCGCGGTCAAGGCCGAAGAAGTCGAAATCGCCGGCAAGAAGAAGATGGCGCTGTTCGCCC 775 Query 10894 AGATCGACCCCACGGACGATCTGGTCGCCATGACCAAGGCCCG---GCAGAAGATCTTTT 10950 || ||||||| || | || ||||||| |||| ||| | || ||||||| |||| Sbjct 776 AGGTCGACCCGACCGCTGACCTGGTCGACATGGTCAACGTGCGCAAGCAGAAGGTCTTCA 835 Query 10951 CGTCCATGGAGCTGCAGCCGAGCTTTGCGGATACCGGCGAGGCCTATCTGGTCGGCCTGG 11010 | ||| ||| | ||| ||||| || | |||| ||||||| ||| |||||||| Sbjct 836 CCAGCATCGAGATTGCCCCGGAATTTGCCGACAGCGGCAAGGCCTACCTGTACGGCCTGG 895 Query 11011 CCGTGACCGACAACCCGGCGAGCCTCGGGTGCGAAGTCCTGCAGTTCAGCGCCAAG---G 11067 |||||| || ||||| ||| |||| | | | ||| ||| |||||| Sbjct 896 GCGTGACGGATTCGCCGGCCAGCATCGGAACCAACATGCTGGCCTTCTCGGCCAAGAACC 955 Query 11068 CCAAAACGAACCCGCTCGCCGCGCGCAAGCAGCACCCGGACAACCTGTTCACCGAAGC 11125 || || | |||| || | ||||||||| |||| ||||||||| ||||||| Sbjct 956 CCGAAGACAGCCCGTTCAAGGACCGCAAGCAGGCGCCGGGAAACCTGTTCTCCGAAGC 1013 >seq3688 Length=631 Score = 95.1 bits (104), Expect = 3e-15 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 17744 GTCCGCGCATCATCCATAGATTGCTCAGGGCAAACAACGTATGTAACTGCTGCGTGTTCT 17803 ||| |||| |||||| || || ||| || |||| ||| | ||| |||||||| Sbjct 247 GTCGGCGCGCCATCCACAGGTTCGACAGCGCGAACAGCGTCATCAGTTGCGCCGTGTTCT 188 Query 17804 TCACCAAGCCTCGATAGCGCACCTTCAAATGCCCGAACTGGCGCTTGATGACCCGGAACG 17863 || ||| || || |||||||||||| || ||||||||||||||||| |||||||||| Sbjct 187 TCGCCAGACCACGGAAGCGCACCTTCACATAACCGAACTGGCGCTTGATCACCCGGAACG 128 Query 17864 GATGTTCTAC 17873 |||| || || Sbjct 127 GATGCTCGAC 118 >seq5091 Length=1229 Score = 86.0 bits (94), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 14/230 (6%) Strand=Plus/Minus Query 19423 AGCACGGCCACGGCGGCGTGCAGCGCGGCGGCGATTGGAC----GGAGGGCACGCGGTGA 19478 ||||| ||| ||| |||||||| |||| ||| | || || | || ||| ||| Sbjct 238 AGCACAAGCACAGCGCCGTGCAGCCCGGCAGCG---GCACCTGTGGTGCGC-CGCAATGA 183 Query 19479 CCGGCATGAACAGCAGCACCGGCCGCGCGATC-GCG--GACCGGCCGCACCTGGCGCAGT 19535 ||||||| || | || | ||| ||| || ||| ||| ||||||| |||| Sbjct 182 TCGGCATGGACGCCCGCTCTGGC---GCGTTCAGCGACGACATCGCGCACCTTCGCCAGT 126 Query 19536 CCATCGGCGACATCCTCACCACGCCGATCGGCTCGCGGGTGATGCGCCGCGACTACGGCA 19595 |||||| ||||||||||||||| || ||||||||||| | |||||| || ||||| Sbjct 125 CCATCGCCGACATCCTCACCACCCCCATCGGCTCGCGTATCGAGCGCCGTGAATACGGTT 66 Query 19596 GCGAGGTCCCCGATCTGATCGACCAGCCGCTGAACCCGGCAACCCGCCTG 19645 | | || || |||||||||||||| | ||| || ||||| ||| Sbjct 65 CGCTGCTGCCGGAGCTGATCGACCAGCCCTTCAACGATGCGACCCGACTG 16 >seq8696 Length=410 Score = 82.4 bits (90), Expect = 2e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 17744 GTCCGCGCATCATCCATAGATTGCTCAGGGCAAACAACGTATGTAACTGCTGCGTGTTCT 17803 ||| |||| |||||| || || ||| || |||| || | ||| |||||| | Sbjct 149 GTCGGCGCGCCATCCACAGGTTCGACAGAGCGAACAGTGTCACCAGTTGCGCCGTGTTTT 90 Query 17804 TCACCAAGCCTCGATAGCGCACCTTCAAATGCCCGAACTGGCGCTTGATGACCCGGAACG 17863 | ||||||| ||| |||||||||| | ||||||||||||||||| |||||||||| Sbjct 89 TGGCCAAGCCGCGAAAGCGCACCTTGGTGTAACCGAACTGGCGCTTGATTACCCGGAACG 30 Query 17864 GATGTTCTAC 17873 |||| || || Sbjct 29 GATGCTCGAC 20 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127864477666576