Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq444 104 6e-17 seq1158 87.8 4e-12 >seq444 Length=38654 Score = 104 bits (114), Expect = 6e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||| || || || || ||||| || || |||| || || |||| Sbjct 4832 AAAACTCTGACAGGCAAGACTATTACCTTGGAGGTCGAGGGTTCCGATACTATCGAGAAC 4891 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || || |||||| || ||| ||| | || ||||| Sbjct 4892 GTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCACCTGACCAACAACGTCTCATCTTT 4951 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| | || ||||| | ||| | ||||||||||| |||| || ||||| Sbjct 4952 GCCGGCAAGCAACTTGAGGATGGTCGTACTCTCTCCGATTACAACATCCAAAAGGAGTCC 5011 Query 206365 ACTCTTCACCTTGTT 206379 ||||||||| | ||| Sbjct 5012 ACTCTTCACTTGGTT 5026 Score = 84.2 bits (92), Expect = 5e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || || || ||||| | || || ||| |||| || || |||| Sbjct 5287 CAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTCGAAGGTTCCGATACTATCGAGAA 5346 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| ||||| || || || || || ||| ||| | || ||||| Sbjct 5347 CGTCAAGACCAAGATCCAAGACAAGGAGGGTATCCCACCTGACCAACAACGTCTCATCTT 5406 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| ||||| | || ||||| | ||| | ||||||||||| |||| || ||||| Sbjct 5407 TGCCGGCAAGCAACTTGAGGATGGTCGTACTCTCTCCGATTACAACATCCAAAAGGAGTC 5466 Query 206364 TACTCTTCACCTTGTT 206379 || || || || ||| Sbjct 5467 CACCCTCCATCTCGTT 5482 >seq1158 Length=25781 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || || || ||||| || || |||| || Sbjct 9476 CAGATTTTCGTCAAGACCCTCACTGGTAAGACAATTACCTTGGAGGTCGAGGGTTCCGAT 9417 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||||| || || || || || || ||| Sbjct 9416 ACCATCGAGAACGTCAAGACCAAGATTCAAGATAAGGAGGGTATCCCACCCGATCAACAA 9357 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| ||||| | || ||||| | ||| | ||||||||||| | Sbjct 9356 CGTCTCATCTTCGCCGGCAAGCAACTCGAGGATGGTCGCACTCTCTCCGATTACAACATT 9297 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || ||||| || |||||| Sbjct 9296 CAAAAGGAGTCAACCCTTCAC 9276 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || |||||| | || || || |||||||||| |||| Sbjct 9692 AAGACCCTCACCGGTAAGACCATCACTCTCGAGGTTGAGGGTTCTGACACCATCGAGAAC 9633 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| || || || ||| || ||| ||| | | |||||| Sbjct 9632 GTCAAGACCAAGATTCAAGACAAGGAGGGTATTCCACCTGACCAACAACGTTTGATCTTC 9573 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || ||||| | ||| | |||| ||||| | || || ||||| Sbjct 9572 GCTGGTAAGCAGCTCGAGGATGGTCGTACTCTCTCCGACTACAATATTCAAAAGGAGTCC 9513 Query 206365 ACTCTTCACCTTGT 206378 || || || || || Sbjct 9512 ACCCTCCATCTCGT 9499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181618168698822