Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq1087 161 1e-34 seq5955 102 8e-17 seq93 98.7 1e-15 seq702 91.5 1e-13 seq1310 86.0 6e-12 >seq1087 Length=202632 Score = 161 bits (178), Expect = 1e-34 Identities = 381/569 (67%), Gaps = 36/569 (6%) Strand=Plus/Minus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302 ||||| | |||||||| ||| ||||| | || |||||| || | || ||||| Sbjct 83870 TTCGGCTACCAGATGCGATTCGATCTGTCGGCGGGTTTTCCTGCCCTGACGACCAAGAAA 83811 Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362 |||||||| || || |||||| ||| || ||||||||||| |||||||| ||||||||| Sbjct 83810 CTGCATCTCAAATCCATCATCCACGAGCTGCTGTGGTTCCTGAAAGGCGAAACGAACATC 83751 Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422 ||||| | || || ||| | |||||||||||||||||| || | || ||| | Sbjct 83750 GCCTATCTCAAGGAAAACGGCGTGACGATCTGGGATGAATGGGCCGACGAGAACGGCGAT 83691 Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAGAT 142482 ||||| || ||||| ||| | |||||| |||||| ||| ||| | Sbjct 83690 CTCGGGCCGGTCTATGGCTATCAGTGGCGCTCCTGG-----CCT-----GCGCCCG---- 83645 Query 142483 GACGTCACAGACGAACCGATCGATCAGATCCGCCGGA--TCATTACTGACTTGAAGAAGT 142540 || | || | ||||||||||| || | || | | || | ||| | Sbjct 83644 ------ACGGCCG-GCATATCGATCAGAT--TGCGAATCTCGTCAGTGCGATAAAGCAAA 83594 Query 142541 CTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATGG 142600 ||| |||| || |||| ||||| |||| ||||| || || ||||| || |||| Sbjct 83593 ATCCCTATTCGCGGCGTCTGATCGTTTCCGCATGGAATCCGGCGCTCGTCGATGAAATGG 83534 Query 142601 CACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAGAAGCGTCTGTCAT 142660 | || || || || ||| ||||||| ||| |||| | ||| | | | || || | Sbjct 83533 CGCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGTGG--CCGACGGAAAG-CTTTCCT 83477 Query 142661 GCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCGT 142720 ||||||| || ||||| || || || || |||||||| |||||||| || || || | Sbjct 83476 GCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATCGCATCCT 83417 Query 142721 ACGCGCTTCTCACACAGCTCATTGCTCGCGAATG----CGGTCTGGAACTCGGAGACTTC 142776 | || || || || |||| || | ||| | | |||||| | | || || ||| Sbjct 83416 ATGCCCTGCTGAC---CCTCA-TGGTGGCGCAGGTCACGGGTCTGCAGCCGGGTGATTTC 83361 Query 142777 GTCCACACCTTCGGCAATTCGCACATCTA 142805 || ||||| | ||| || |||| |||| Sbjct 83360 GTTCACACGCTGGGCGATGCGCATCTCTA 83332 >seq5955 Length=632 Score = 102 bits (112), Expect = 8e-17 Identities = 166/234 (71%), Gaps = 9/234 (4%) Strand=Plus/Minus Query 142549 TCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATGGCACTTCCT 142608 || ||||| | |||||| | || |||||||| || || || |||||||| || | Sbjct 452 TCCCGTCGGCTCATCGTGTCTGCCTGGAACCCGGCCGACATCCCGGACATGGCGCTCGCG 393 Query 142609 CCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAG--AAGCGTCTGTCATGCCAGC 142666 || |||||| | ||||||| ||| |||||| | || | |||| | || || |||| Sbjct 392 CCCTGTCACGCGCTGTTCCAGTTCTACGTCGCC--GACGGCAAGC---TCTCGTGTCAGC 338 Query 142667 TGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCGTACGCGC 142726 |||||||||| || ||| ||||||||| || ||||||||||| || || ||||| Sbjct 337 TGTATCAGCGCAGCGCCGACATGTTCCTCGGTGTGCCGTTCAACATCGCCTCCTACGCCT 278 Query 142727 TTCTCACACAGCTCATTGCTC-GCGAATGCGGTCTGGAACTCGGAGACTTCGTC 142779 | || || | | || || | || || || || || | ||||||||||||| Sbjct 277 TGCTGACCATGATGATCGCCCAGCAGGTG-GGCCTCGAGCCCGGAGACTTCGTC 225 >seq93 Length=584700 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 142228 GGAACGAAAGCAATCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTT 142287 ||||||||| | || || | ||||||||||| || | | |||| || || | Sbjct 272889 GGAACGAAAAGTGTTTTTGGCTACCAGATGCGTTTTGATTTAAGTGAAGGTTTCCCAATG 272830 Query 142288 CTCTCCACGAAGAAGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAA 142347 | | || || || || ||| | || ||||||||| |||| | || ||||| | ||| Sbjct 272829 GTTACGACAAAAAAACTCCATTTAAAATCGATCATCTACGAATTGCTTTGGTTTTTAAAA 272770 Query 142348 GGCGATACGAACATCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCT 142407 || ||||| || || || |||||| | || | || || |||||||| ||||||||| Sbjct 272769 GGAGATACAAATATTAAATATCTTAAGGAAAATGGAGTTAAAATCTGGGACGAATGGGCT 272710 Query 142408 GATGCCAATGGCAACCTCGGACCTGTCTACGG 142439 ||| | |||||| | | |||||||| ||||| Sbjct 272709 GATTCTAATGGCGATTTAGGACCTGTTTACGG 272678 >seq702 Length=79980 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 148837 TTCATCGAGCGTATNNNNNNNNNNGAAGAAGAGAAGAAGACGATCGGCGATGACATCAAG 148896 ||||||||||| || || ||||| |||| ||| | || ||||||||| Sbjct 9743 TTCATCGAGCGCATCGAGCGCCTTGAGGAAGAAAAGACCACGCTTCAGGACGACATCAAG 9802 Query 148897 GACGTCTACGGC-GATGCCAAAGGAAATGGCTTCGACACCAAGATCTTGAAGAAGGTCAT 148955 || || | ||| || ||||| || |||| ||||||||||||| | | | || | Sbjct 9803 GAAGT-GATGGCGGAAGCCAAGGGCCGCGGCTACGACACCAAGATCATCCGCACGATCGT 9861 Query 148956 CAACATCCGCAAGAAGGATGAGCAGGAGCGCATGGAAGAGGAAGCAATCCTCGATACGTA 149015 | | | ||||||||||||| | | ||||||| |||||||||||| |||||||| ||| Sbjct 9862 CCGCCTGCGCAAGAAGGATGCGAACGAGCGCAAGGAAGAGGAAGCGATCCTCGAGCTGTA 9921 Query 149016 TCTCGCTGCTCTCGGCATGATC 149037 | || ||||||||| || Sbjct 9922 CATGAACGCCCTCGGCATGGTC 9943 >seq1310 Length=146132 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 142240 ATCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAG 142299 || || || ||||||||| | ||||| || |||||||||| || || |||| || Sbjct 104785 ATTTTTGGCCATCAGATGAGGTTCAACCTCCAGGAAGGCTTTCCCCTGGTCACCACCAAA 104844 Query 142300 AAGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAAC 142359 || || ||| | || || || ||| |||||| | ||||| | | || || || || Sbjct 104845 AAACTTCATTTAAAATCCATTATCCACGAACTGATCTGGTTTTTAAGTGGGGACACCAAT 104904 Query 142360 ATCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGC 142419 || || || | | |||| || |||||||||||||| |||||||||| || || Sbjct 104905 ATTGGCTACCTGAAAGCAAACAATGTAAAGATCTGGGATGAGTGGGCTGATGAAAACGGT 104964 Query 142420 AACCTCGGACCTGTCTACGG 142439 |||| || ||||| || || Sbjct 104965 GACCTGGGCCCTGTTTATGG 104984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500415478996320