Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_025430.1 Length=42351 Score E Sequences producing significant alignments: (Bits) Value seq136 109 1e-19 seq6167 82.4 2e-11 >seq136 Length=398197 Score = 109 bits (120), Expect = 1e-19 Identities = 151/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 233 ACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCGCGTTTGCAGC 292 |||||||| || | ||||| ||| ||| | |||||||||||||||||| || |||||| Sbjct 368265 ACGATTTCCGTCGAATAGCGGTCATTGCCGGTCTGGTCCTGCCACTTGCGGGTCTGCAGC 368324 Query 293 GCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAGC 352 |||||||| | | ||||| |||| || |||||||| || | | ||||| Sbjct 368325 GCGCCTTCCAGATAAACCTTCATGCCCTTCTTGAGGTACTGTTCAGCCACCTTGGCCAGG 368384 Query 353 TT-TC--CGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCCCTGTCTGC 409 || || ||| ||||| |||| ||||||||| || ||||| || ||| || | | | Sbjct 368385 TTGTCGTTGAAAATGACGACGCTGTGCCATTCGGTCTTTTCCTTGCGCTCGCCGCTGTTC 368444 Query 410 TTATCCTTCCAGGTTTCAGACGTGGCAAT 438 || || |||| |||| || |||||||| Sbjct 368445 TTGTCGCGCCAGCTTTCCGAGGTGGCAAT 368473 >seq6167 Length=616 Score = 82.4 bits (90), Expect = 2e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 316 GCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTG 375 ||| |||||||| || | | || | ||| || ||||| ||||| | ||||||||||| Sbjct 416 GCCCTTGCGCAGATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGCACCACGCGGTG 357 Query 376 CCATTCCGTTTTTTCTTTCTTCTCCCCTGTCTGCTTATCCTTCCAGGTTTCAGACGTGGC 435 ||||||||| | || | ||||||| ||||| || || |||| |||| |||||||| Sbjct 356 CCATTCCGTCTGCTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTTTCTGACGTGGC 297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135380083162492