Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq32 109 5e-19 seq2491 100 3e-16 seq1158 89.7 5e-13 >seq32 Length=13759 Score = 109 bits (120), Expect = 5e-19 Identities = 285/434 (66%), Gaps = 3/434 (1%) Strand=Plus/Plus Query 147884 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTTCCG---C 147940 ||| |||||||||||| || || | |||||| || | ||||| || ||||||||| | Sbjct 4107 AGACGTCGGCGTGCCATGGCTCGAGGTAGACTGCAAATGCACCCTTGCGCTTTCCGCCAC 4166 Query 147941 CCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCG 148000 | |||||||||| ||| | ||| ||| ||||| || | |||||| | || ||| | | Sbjct 4167 CTTGGTCGACATAGCGGGCAGTGTCGTTGAACACACGGAGCATGGGGACTAGACCGTTGG 4226 Query 148001 CAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGC 148060 |||||||||||| ||| | | || | || || | | |||||| || || Sbjct 4227 AGGTGCCGTTGGTGCCGCGGATGTAGGAGCGGGCAGCACGGATCTTGTGCACAGCAATGC 4286 Query 148061 CAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGT 148120 ||||||| || | |||| || ||| ||| || | | ||| |||||| || | Sbjct 4287 CAATGCCTCCAGCAGACTTGGAGATGAGAGCACATTGCTTGAGTGTGTCGTAGATACCCT 4346 Query 148121 CGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTC 148180 ||||| ||||| || | | | || || || |||| || ||| | || | Sbjct 4347 CGATGGAGTCGTCCTTCATTTGGACGAGGAAGCAGGAGGACATCTGGGGATAGGGGGTGC 4406 Query 148181 CCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACG 148240 | || ||| ||||||||| | || || || || || | || || | | | || | Sbjct 4407 CAGCATTGAACAGGGTGGGAGTGGCATGAGTGAAGTATCTCTGTGACAAGAGGTGGTAGG 4466 Query 148241 TCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGT 148300 | | || || | || |||||||||||||| || || || | || ||||| | | || Sbjct 4467 TGCCGATGGCAGCCTCAATGTCGTCGCCGTGGATACCAAGGGACACACGCATCAAGAGGT 4526 Query 148301 GCTGTGGTCGTTCG 148314 | || || || ||| Sbjct 4527 GTTGGGGACGCTCG 4540 >seq2491 Length=10632 Score = 100 bits (110), Expect = 3e-16 Identities = 299/453 (66%), Gaps = 15/453 (3%) Strand=Plus/Plus Query 46824 GCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCC 46883 ||||| || ||||||| ||||| ||| |||||| | || || || || || Sbjct 4415 GCCGAACGTTTGGTGGCTTTCGCCGCAGTGGAAGGCATTTTCTTCAGCGGGAGCTTCTGT 4474 Query 46884 GCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTG 46943 | || || | | |||| | |||| | ||||| || || || || ||||| |||||| Sbjct 4475 TCGATCTTCTGGTTGAAAAAAAGAGGCCTGATGCCAGGGCTAACCTTTAGTAATGAGTTG 4534 Query 46944 ATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACGCGCGTG 47003 || || | || || || | || || ||||| || || ||| || | || | Sbjct 4535 ATTTCCAGAGATGAGGGGATGCATTGTGAATTTGCCTGCCTGCTTTATAAAATGCTCAAA 4594 Query 47004 AATGAGAAATTAAACTCGGACA-CGATCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGA 47062 ||| ||| | | | ||| || || || | || | | || ||||| ||||| Sbjct 4595 AAT---AAACTGAGCCAGGAAGTCGTTCATG-GAATTATCCGCGACGCGGTAGAAATCGA 4650 Query 47063 AAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGTCTAT 47122 |||||| ||| |||| | || |||| || ||| || | || ||||| ||| | || Sbjct 4651 AAAGGAATTTATTACAGATGCCTTGCCGGTTGCCCTGATCGGGATGAATGCAAAACTGAT 4710 Query 47123 GTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGG-TGCAG---CTCGGACA-ACCG 47177 || | |||||||||||||| || || | | ||| ||||| || || | ||| Sbjct 4711 GTCACAGTATATTGAGTTTGTTGCAGA----CAGATGGCTGCAGGAACTGGGTTATACCA 4766 Query 47178 AAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAA 47237 |||||| | | ||| ||||||||||| |||||| | | || || || | |||||| Sbjct 4767 AAATATATCA-TGCCACCAATCCGTTTGATTTTATGGAGATGATCTCCCTGCAAGGCAAA 4825 Query 47238 ACCAATTTTTTCGAGAAACGAGTCGGAGAGTAT 47270 |||||||| || |||||||| || || || ||| Sbjct 4826 ACCAATTTCTTTGAGAAACGTGTGGGTGATTAT 4858 >seq1158 Length=25781 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | ||||||| |||||||||||||| ||| | || || ||| ||| Sbjct 9271 ACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAGAGAGTGCGACCATCCTCG 9330 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || || || |||| |||| ||||| |||||||| || || || || || ||||| | Sbjct 9331 AGTTGCTTGCCGGCGAAGATGAGACGTTGTTGATCGGGTGGGATACCCTCCTTATCTTGA 9390 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | ||||||| ||| || || | || | || ||| Sbjct 9391 ATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCGACCTCCAAGGTAATTGTCTTA 9450 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || | |||||||||||| Sbjct 9451 CCAGTGAGGGTCTTGACGAAAATCTGCAT 9479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476531474861520