Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq167 459 4e-123 seq32 183 4e-40 seq2491 147 3e-29 seq915 147 3e-29 seq1758 122 1e-21 >seq167 Length=135686 Score = 459 bits (508), Expect = 4e-123 Identities = 458/591 (77%), Gaps = 16/591 (3%) Strand=Plus/Plus Query 2139435 TTCTCTGTAGATATGGATGGTTCTTCTTTAATTGCAATGGCAGGCGAGCA---------- 2139484 ||||||||||| |||||||||||| | ||||| | |||||| ||||| || Sbjct 44691 TTCTCTGTAGACATGGATGGTTCTGCATTAATGGAAATGGCGGGCGACCAGATTGGCAGC 44750 Query 2139485 --ATTGGGACCTGATGCTAAGAAAAAATATAGATTCTACTTTTACCTTCAAACAATTATT 2139542 | ||||| | || ||||||||| || || ||||||| |||||| |||||||||||||| Sbjct 44751 CAAATGGGAGCCGACGCTAAGAAAGAA-ATCGATTCTAGTTTTACTTTCAAACAATTATT 44809 Query 2139543 TGAAGagaaaaaagacagcatcgcaaaattatctccagaagcacaaaaagagcttaaaaa 2139602 ||| ||||||||||| || || || ||||||||||| || |||||||||| ||||||| Sbjct 44810 TGACGAGAAAAAAGATAGTATTGCTAAATTATCTCCGGAGACACAAAAAGAAATTAAAAA 44869 Query 2139603 actggaaaattttgttgtaaataccaaaatgaatggtgaaaagaaaGAGTTTTTAATGAC 2139662 ||||||||||||||| || |||| ||||||| | |||||||||| ||||||||||||| Sbjct 44870 ACTGGAAAATTTTGTAGTTCATACTAAAATGAGTTCTGAAAAGAAACAGTTTTTAATGAC 44929 Query 2139663 ACTTTCAACTGATTTTAAAAATGTAAACGAATTGCAAGATGCATTGCAATCTTTGAGCGC 2139722 | ||| |||||||||||||||||||||| |||| ||| || ||| | | || | Sbjct 44930 TTTAACAAGTGATTTTAAAAATGTAAACGAAATGCAGGATATTTTACAAACACTCAGTAC 44989 Query 2139723 GCTTCAGAAATTAGAAGGTGGAGCAAATAGCTCAACGCCTTTTGCAAAAGGATTAGGAGA 2139782 || || ||| ||||||| || || | | || || | || || || ||| | Sbjct 44990 ACTGCAAAAACTAGAAGGCGGTGCTTCGGCGGCGTCTCCATTAGGAAGTGGTTTTGGAAA 45049 Query 2139783 CAATAACAGCAAACTAAGCTATACCTACGACGGAAAGAAATTTACGCGTAAAGCAGTAAT 2139842 ||||||||||||| |||| || | |||||||||||||||||||| | ||||| || || Sbjct 45050 CAATAACAGCAAATTAAGTTACAGTTACGACGGAAAGAAATTTACAAGAAAAGCGGTTAT 45109 Query 2139843 CGATAAAGCAAAATTGGCAGCAAAAGCAAAAGATTC-TGTGCAAGATATGTCCAAGATGA 2139901 ||| | |||| ||| | |||||| |||||||| |||| ||||||||| || |||| Sbjct 45110 CGACACTCAAAAAAAGGCTGAAAAAGCTAAAGATTCAGGTGC-AGATATGTCTAAAATGA 45168 Query 2139902 TTTTTGCTTCCTCGACCTATACCATAAAATATCATTTTCCTAAACGAATCaaaaaaaGTA 2139961 | |||||||| || || ||| |||||||| |||| |||||| || ||||||||| Sbjct 45169 TGTTTGCTTCATCAACGTATGTTGTAAAATATAATTTCCCTAAAAAGAT-TAAAAAAGTA 45227 Query 2139962 TCAAACCCAAATGCTTTGTTTAGCGAAGATCGAAAATCAATTACAATTCAA 2140012 || || ||||| |||||||| ||||| |||||||||||||||||||||||| Sbjct 45228 TCGAATCCAAACGCTTTGTTCAGCGACGATCGAAAATCAATTACAATTCAA 45278 Score = 320 bits (354), Expect = 2e-81 Identities = 236/274 (86%), Gaps = 1/274 (0%) Strand=Plus/Minus Query 2140294 TTTCAAGATCACCACTTTTTCCTAATGTATACACATGCGGATGTTCTACAAAAAGTAAAT 2140353 |||| | ||| || ||||| ||||| || || |||||||||||||| ||||| | ||||| Sbjct 45551 TTTCTAAATCGCCGCTTTTACCTAAAGTGTAAACATGCGGATGTTCAACAAATAATAAAT 45492 Query 2140354 AATTGGGTGTTGGTAAATCGAGTTCTTCTCTTCGGTTTTTGATTTTTAAGTCGACTATAT 2140413 |||| |||||||| | ||| ||||||||||||| ||||||||||||||| ||||| ||| Sbjct 45491 AATTAGGTGTTGGCAGATCCAGTTCTTCTCTTCTGTTTTTGATTTTTAAATCGACAATAG 45432 Query 2140414 CTTTGAAAA-TTCTTCCTGATATTCCCAGGTCGATTTATAATCTTTACTTCCTAAATCCT 2140472 | |||| |||||||||||||||||| ||||||||||||||| | |||| | |||| Sbjct 45431 CAGCAAAAAGTTCTTCCTGATATTCCCATGTCGATTTATAATCTCTGTTTCCCAGTTCCT 45372 Query 2140473 GAAGTTGAAtttttttattcattttaattatttttCAAACTCGACATCAAAGTTGAGTTT 2140532 ||||||||||||||||||||||| || ||||||||||||||| ||||||||||| ||||| Sbjct 45371 GAAGTTGAATTTTTTTATTCATTGTATTTATTTTTCAAACTCAACATCAAAGTTAAGTTT 45312 Query 2140533 GTCAGGATTCTCCATATAATCCGTAAAAGGGTAT 2140566 ||| |||||||||||||||||||| |||||| || Sbjct 45311 GTCCGGATTCTCCATATAATCCGTGAAAGGGAAT 45278 >seq32 Length=13759 Score = 183 bits (202), Expect = 4e-40 Identities = 225/305 (74%), Gaps = 2/305 (1%) Strand=Plus/Minus Query 259878 TCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCA-GCGACGCCCACGCTCTTT 259936 ||| ||||||| | | |||| ||| | ||||| ||| || || ||||| || || Sbjct 4472 TCGGCACCTACCACCTCTTGTCACAGAGATACTTCAC-TCATGCCACTCCCACCCTGTTC 4414 Query 259937 AATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGAT 259996 ||||| ||||| || || |||| || || ||||| || | | ||||||| ||| Sbjct 4413 AATGCTGGCACCCCCTATCCCCAGATGTCCTCCTGCTTCCTCGTCCAAATGAAGGACGAC 4354 Query 259997 TCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGC 260056 || |||||||| ||||| ||||| |||||||| || || |||||||||||| | || || Sbjct 4353 TCCATCGAGGGTATCTACGACACACTCAAGCAATGTGCTCTCATCTCCAAGTCTGCTGGA 4294 Query 260057 GGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAAC 260116 ||||| || |||| | |||||| | || || || || ||||| | ||||||||| Sbjct 4293 GGCATTGGCATTGCTGTGCACAAGATCCGTGCTGCCCGCTCCTACATCCGCGGCACCAAC 4234 Query 260117 GGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTC 260176 ||| |||||||| || || |||||||| || || || |||||||| || ||||| ||| Sbjct 4233 GGCACCTCCAACGGTCTAGTCCCCATGCTCCGTGTGTTCAACGACACTGCCCGCTATGTC 4174 Query 260177 GACCA 260181 ||||| Sbjct 4173 GACCA 4169 Score = 109 bits (120), Expect = 8e-18 Identities = 332/502 (66%), Gaps = 22/502 (4%) Strand=Plus/Minus Query 262918 GGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTG 262977 || || |||||||| |||||| | || | ||||||||| ||| | || ||||||||||| Sbjct 3234 GGTCTCCGCAACTCCTTGCTCATTGCCCCCATGCCCACTGCCTCAACCTCGCAGATCCTC 3175 Query 262978 GGCAACACCGAGGCGTTCGAGGTCAT-CACGAGCAACATCTACACGCGCCGCGTGCTCTC 263036 ||||||| |||| ||||| | ||| ||| |||||||||| | || || ||| | | Sbjct 3174 GGCAACAACGAGTGCTTCGA-GCCATACACCTCCAACATCTACTCTCGTCGTGTGTTGGC 3116 Query 263037 GGGCGACTTTACCGTGGTCAACCGCCA---CCTGGTCAAGCGCATGGTGGCGCGCGGCCT 263093 || || || ||||| |||||| || || | | | | || |||| | ||| | Sbjct 3115 TGGAGAGTTCACCGTCGTCAACAAGCAGTTGCTTGCCGATCTCA---TGGCCCTTGGCTT 3059 Query 263094 GTGGACGCCCGACTTTCGCGACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGA 263153 |||||| || || | ||| |||| || | || || | ||| | | Sbjct 3058 GTGGACCCCAGAGATGAAGAACCACATCATCGCCAACCGTGGTTCCATCCAGAACGT--- 3002 Query 263154 CGACGAGGAGGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGC-CCA 263212 || ||| | || || | |||| | | |||||| || |||||| | | || Sbjct 3001 --ACCAGG-CATCCCCGAGGACTTGAAGGAGTTGTACAAGACTGTCTGGGAGATCCGTCA 2945 Query 263213 ACCGGGTGACCATTGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGC 263272 || || |||||| ||||| ||||| || | ||| |||| || ||||| Sbjct 2944 ACGTAGT-CTCATTGACATGGCTGCCGATCGTGGTGCCTTCATCGATCAATCACAGTCAT 2886 Query 263273 TCAACCTGTACCTCGCCGA-CCCGAC--GGCCGAGAGCATCACGTCGATGCACGCCTATG 263329 ||||| | | | ||||| ||| || ||| || |||| || |||||| ||| | Sbjct 2885 TCAACGTCTTTATTGCCGAGCCCAACTTTGCCAAG---CTCACCTCAATGCACTTCTACG 2829 Query 263330 CGTGGCGTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACG 263389 | ||| || || |||||||||||||||||| || | || || |||||||| | | Sbjct 2828 CATGGAAGAAGGGTCTTAAGACTGGCATGTACTATTTGAGAACTCGTGCCGCTGCCGATG 2769 Query 263390 CCATTCAATTCACCGTCGATCA 263411 |||| |||||||| |||||||| Sbjct 2768 CCATCCAATTCACTGTCGATCA 2747 Score = 89.7 bits (98), Expect = 7e-12 Identities = 149/211 (71%), Gaps = 12/211 (6%) Strand=Plus/Minus Query 262092 AGATCT--GGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTA 262149 |||||| ||| ||||| ||| | |||| |||||||| || || |||||||| | || Sbjct 3868 AGATCTTTGGTTCGCCATCATCGAGTCCCAGATCGAGACTGGTACTCCCTACATCTTGTA 3809 Query 262150 CAAGGACGCCGTCAACCTGACCAG--CAACCAGCAGAACCTGGGCACCACGACAGAGGCC 262207 |||||| || ||| || | || |||||| || ||||| ||||||| || || Sbjct 3808 CAAGGATGCATGCAA--TGCCAAGTCCAACCAACAAAACCTCGGCACCATCTCATGCTCC 3751 Query 262208 AACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAACCT- 262266 ||| ||||||| |||||| |||| | | || || |||| ||| |||||| | Sbjct 3750 AACTTGTGCACTGAGATCATCCAATACACTTCACCAGAGGAGGTTGCTGTTTGCAACTTG 3691 Query 262267 --CTCGAGCGTGGCCCTGCCCAAGTTTGTCA 262295 ||||| || |||||||||||| ||||| Sbjct 3690 GCCTCGATCG---CCCTGCCCAAGTATGTCA 3663 >seq2491 Length=10632 Score = 147 bits (162), Expect = 3e-29 Identities = 278/403 (69%), Gaps = 12/403 (3%) Strand=Plus/Plus Query 1455875 CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGG 1455934 |||||| |||||||| || | || || |||||| || || || || ||||| || Sbjct 4123 CGAGCGTCATTTCATTTCTCATATACTTGCTTTTTTT-GCTGCAAGTGACGGCATTGTAA 4181 Query 1455935 CCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTT 1455994 || ||||| || | ||| |||| || || || | || || || |||| |||| Sbjct 4182 ATGAAAACCTTGCAGTGAACTTCATGAGCGAAGTACAGCTTCCCGAAGCCCGTTGTTTTT 4241 Query 1455995 ACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACA 1456054 | || ||||||||| || ||||||||||||||||||||||| |||| |||||||| | Sbjct 4242 ATGGCTTCCAGATCATGATGGAAAACATCCACTCTGAAACCTATGCGCTGCTGATCGATA 4301 Query 1456055 CCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGT 1456114 |||| | || || || | || || ||| || || | ||| | || ||||| || | Sbjct 4302 CCTATATTAAAGATCCTGAAGAAAAAGACAGGCTGTTCCATGCCGTAGAGACGGTTCCTT 4361 Query 1456115 CGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTT 1456174 || | |||||| || || ||||| || ||||| |||||| || | || Sbjct 4362 GTGTAAAGAAAAAAGCAGAATGGGCATTGCGCTGGAT------TGAGGGC--GGAAATTT 4413 Query 1456175 TGCCGAGCGGCTCGTCGGCTTT-GCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCT 1456232 |||||| || | || |||||| ||||| || || ||||| || ||| || || |||| Sbjct 4414 TGCCGAACGTTTGGT-GGCTTTCGCCGCAGTGGAAGGCATTTTCTTCAGCGGGAGCTTCT 4472 Query 1456233 GCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 | | ||||| ||| | || || | ||||| ||||| || || Sbjct 4473 GTTCGATCTTCTGGTTGAAAAAAAGAGGCCTGATGCCAGGGCT 4515 >seq915 Length=13476 Score = 147 bits (162), Expect = 3e-29 Identities = 235/329 (71%), Gaps = 10/329 (3%) Strand=Plus/Plus Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGA-- 1456505 ||| | |||||||||||||||||| ||||||||| | ||| |||||| | |||| Sbjct 264 GGTCTTCACTGTGACTTTGCCTGTTTGCTCTACAGCAAGCTTGTCAACCGTC--TCGATG 321 Query 1456506 CCGACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCG 1456565 || || | | || ||||| ||| || || ||| ||||| |||||| ||| | Sbjct 322 CCAACACTCTCGAGTCCATCATTCGCGATGCTGTAGAGTGTGAGAAGGAGTTTATCACCC 381 Query 1456566 AGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTC-ATGTGCCAGTACATTGA 1456624 | || || || || | ||||| ||||||||| ||||| |||| |||||||| || Sbjct 382 AATCACTCCCTGTCGATCTCATTGGCATGAACAGT--CGCTCCATGTCACAGTACATCGA 439 Query 1456625 ATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCC 1456684 |||||| ||||| || || ||| || ||||| | | ||||| |||| | || Sbjct 440 GTTTTGT-GCCGATCGTCTCCTCCTTGCCCTCGGATACA-AGAAGATCTACAACTCTACC 497 Query 1456685 AACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGC 1456744 ||||| ||| ||||||||| ||||||||||| |||||||||||||||||||| | Sbjct 498 AACCCATTCGACTGGATGGAGATGATCTCGCTCATTCGCAAGACCAACTTTTTCGAGAAC 557 Query 1456745 CGCGT-GGCGAGTACGCCAAGGCCGGCGT 1456772 || || ||| ||||| ||| | || || Sbjct 558 CGTGTCTCCGATTACGCAAAGTCTGGTGT 586 Score = 111 bits (122), Expect = 2e-18 Identities = 163/225 (72%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 1456096 GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAAC 1456155 |||||||| || | || | || | ||| ||||| || ||||| |||| ||||| | | Sbjct 54 GCCATCGAGACCATTCCATGTGTAAAGAAGAAGGCTGAGTGGGCTATGAGATGGATTACC 113 Query 1456156 AAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCT 1456214 || || | || ||||| ||||| | |||| |||||| || || ||||| |||| Sbjct 114 AACT----CCAAGTCA-TTTGCTGAGCGTTTGGTCGCCTTTGCAGCTGTAGAGGGTATCT 168 Query 1456215 TTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTC 1456274 ||||| || || |||||| |||||||||||||||||||||| ||| | |||||||| Sbjct 169 TTTTCAGTGGTAGCTTCTGCTCCATCTTTTGGCTCAAGAAGCGTGGCTTGATGCCCGG-A 227 Query 1456275 TTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA-AGTTTTCAC 1456318 || || ||||| | |||||||| ||||| || ||||| Sbjct 228 TTGACATTCTCTAACGAGCTCATCAGTCGTGACGAGGGTCTTCAC 272 >seq1758 Length=7412 Score = 122 bits (134), Expect = 1e-21 Identities = 233/338 (69%), Gaps = 4/338 (1%) Strand=Plus/Minus Query 332810 ACCTTTTCGGCGGCGACAATCTCGCGCAGGCGACCGGCGATTTGGGCGTCAGTGAGGCGC 332869 ||||| || ||| ||| | ||| ||||| | |||| || ||||| | ||| ||| Sbjct 6963 ACCTTCTCCGCGACGATTACCTCTTTGAGGCGCTTGACGATCTGTGCGTCCGAGAGTCGC 6904 Query 332870 ACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTG 332929 |||||||| | || || || ||| | || |||||||| | | | |||||||||| Sbjct 6903 GTGAAGCGCAGCACTGCGCACCGCGACTGAATGGGCTCGATGATCTTGGTCGACGTGTTG 6844 Query 332930 CAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT-CGACCGGAGGGCCTG 332988 |||||||| || || || || || | || | |||||| | |||| | || ||||| Sbjct 6843 CAGGCCAGTGCGAAACGGGTGGTTGCCGAGTGTATCTCCATGATGCGAC-GAAGCGCCTG 6785 Query 332989 TTGGGCCGCCGGCGTGAG-GCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGT 333047 || || ||| ||| | ||| |||||||| |||||||||||||||||||| || ||| Sbjct 6784 CTGTGCGCCCGACGTCATTGCA-TCGGCCTCATCGAGGATGATGATCTTGTGTCGTCCGG 6726 Query 333048 GCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGC 333107 | ||||| ||| | | | ||| ||||| | | |||||| ||||| | Sbjct 6725 GTGGCAGTGTCACCTTCTGCTTTGCGAACGTCTTGATCTTGTCGCGCACCACGTCGAGCG 6666 Query 333108 CGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCG 333145 ||| |||||||| || || || ||| || |||||| Sbjct 6665 TGCGGTCGTCCGAGGCATTCAGCTCGTAGACAGCCTCG 6628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176520481503884