Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1158 125 7e-24 seq444 104 2e-17 seq60 89.7 5e-13 seq974 87.8 2e-12 >seq1158 Length=25781 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | ||||| || || ||||| ||||||||||| ||||||||| Sbjct 9481 CCTCCACGGAGACGAAGGACGAGATGGAGGGTGGACTCCTTTTGAATATTGTAGTCGGAG 9540 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || |||||||| || || || || |||||||| || || || || || Sbjct 9541 AGAGTACGACCATCCTCGAGCTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGA 9600 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || |||||||| || ||||| || | ||||| || || || Sbjct 9601 ATACCCTCCTTGTCTTGAATCTTGGTCTTGACGTTCTCGATGGTGTCAGAACCCTCAACC 9660 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| |||||||| | || ||||| ||||||||||| Sbjct 9661 TCGAGAGTGATGGTCTTACCGGTGAGGGTCTTAACAAAAATTTGCAT 9707 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| || || ||||| |||||||| |||||||||||| || ||| || ||| || Sbjct 9043 ACGAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTACGACCGTCCTCA 9102 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || || || ||||| || | ||| || |||||||| || || || || || |||||| Sbjct 9103 AGTTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGTGGGATACCCTCCTTGTCTTGA 9162 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| || | || || || || || || || || ||||| ||| Sbjct 9163 ATCTTGGTCTTGACGTTCTCGATGGTATCAGAACCCTCAACCTCAAGGGTGATGGTCTTA 9222 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || |||||||| Sbjct 9223 CCAGTCAAGGTCTTGACAAAGATTTGCAT 9251 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| | ||| || || || ||||||||||||||||| ||| Sbjct 9253 CCACCACGGAGACGGAGCACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAG 9312 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || ||||| || ||||| || || || | ||| || |||||||| || Sbjct 9313 AGAGTGCGACCATCCTCGAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGATCGGGTGGG 9372 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || |||||||| || ||||| || | || ||||| || || Sbjct 9373 ATACCCTCCTTATCTTGAATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCGACC 9432 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||| || ||||| || | || || |||||||| ||||| Sbjct 9433 TCCAAGGTAATTGTCTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 9479 Score = 82.4 bits (90), Expect = 8e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || ||||| |||||||| |||||||||||| | Sbjct 9709 CCACCACGGAGACGGAGAACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 9768 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || || || || || || ||||| || | ||| || || || || || Sbjct 9769 AGGGTGCGACCATCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGG 9828 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || ||||| || || ||||| || | || ||||| || || Sbjct 9829 ATACCCTCCTTATCTTGGATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCAACC 9888 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || | || ||||| || || || | || || || || |||||||| || Sbjct 9889 TCCAAGGTGATGGTCTTGCCAGTCAGTGTCTTTACAAAGATTTGCATGTT 9938 >seq444 Length=38654 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||| || || ||||| |||||||| ||||||||||| | Sbjct 5271 CCACCACGGAGACGGAGGACGAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAA 5212 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || |||||||| || || || || || | ||| || || || || || Sbjct 5211 AGAGTACGACCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGTTGTTGGTCAGGTGGG 5152 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || || ||||| || | ||||| || || || Sbjct 5151 ATACCTTCCTTGTCTTGGATCTTGGTCTTGACATTCTCAATGGTGTCAGAACCCTCGACC 5092 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| ||||| || | || |||||||| |||||||| Sbjct 5091 TCAAGAGTGATGGTCTTACCAGTGAGGGTCTTAACGAAGATTTGCAT 5045 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | || | ||| || ||||| |||||||| ||||||||||| | Sbjct 5727 CCTCCACGAAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAA 5668 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || || || || || ||||| || | ||| || || || || || Sbjct 5667 AGGGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGG 5608 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || |||||||| || ||||| || | ||||| || || || Sbjct 5607 ATACCCTCCTTGTCTTGAATCTTGGTCTTGACATTCTCAATGGTGTCAGAACCCTCGACC 5548 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| ||||| || || || || ||||| |||||||| Sbjct 5547 TCGAGAGTGATGGTCTTACCAGTCAAGGTCTTGACGAAGATTTGCAT 5501 >seq60 Length=27343 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || |||||||| ||||||||||| || |||| || || || || || Sbjct 11538 GTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCCGAAAGGGTGCGACCATCCTCAAGTTG 11597 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || || || | ||| || || ||||| || || || || || ||||| || || Sbjct 11598 CTTACCGGCGAAGATAAGACGTTGTTGGTCGGGGGGGATACCCTCCTTGTCTTGGATCTT 11657 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| || | ||||| || || || ||||| || ||||| || || || Sbjct 11658 GGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCGACCTCGAGTGTGATGGTCTTTCCTGT 11717 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| || ||||| Sbjct 11718 CAATGTCTTAACGAAGATCTGCAT 11741 >seq974 Length=18895 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || || || ||||| || ||||||||||| Sbjct 4837 CCACCGCGGAGACGGAGGACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAG 4896 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || ||| || | ||| || || || || |||||||| || |||||||| || Sbjct 4897 AGGGTACGACCGTCCTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCGGGGGGG 4956 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || ||||| || || ||||| || | ||||| || || || Sbjct 4957 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCTGAGCCCTCGACC 5016 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 || || |||||||| ||||| || Sbjct 5017 TCAAGGGTAATGGTCTTACCTGT 5039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505313859482640