Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq126 158 2e-33 seq436 84.2 3e-11 >seq126 Length=461790 Score = 158 bits (174), Expect = 2e-33 Identities = 358/537 (67%), Gaps = 6/537 (1%) Strand=Plus/Minus Query 161159 GAAGTAGAACCTGATGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTC 161218 |||||| |||| ||||| || || || || || || |||||| || |||||| ||| Sbjct 313969 GAAGTACAACCAGATGAAATTTATAATCTTGGTGCGATGAGTCACGTAAAAGTAAGTTTT 313910 Query 161219 GAGGAACCTGAATATACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCA 161278 || || |||||||| || | |||||| | | ||||| || | |||| || ||| Sbjct 313909 GATACTCCAGAATATACTGCTAATGCTGATGGTATAGGAACTTTACGCTTATTAGAAGCA 313850 Query 161279 GTTCGTCTCCTAGGTATGACAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTG 161338 | ||| |||| | | ||| | | | || || || || || || ||||||| Sbjct 313849 ATGCGTATCCTGAATTTAACAAAGAAAACCAAAATATATCAAGCTTCTACATCTGAGTTG 313790 Query 161339 TATGGGTTGGTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCA 161398 ||||| || || || | || || ||||| || ||||| || || || ||||| Sbjct 313789 TATGGCTTAGTTCAGGCAGTTCCTCAATCAGAAAGCACTCCTTTTTATCCTCGTTCTCCT 313730 Query 161399 TATGGCGTAGCTAAACTCTATGGATATTGGATT---GTAAAGAACTACAGAGAGAGTTAT 161455 |||| || || ||| | |||| ||||||||| ||| || || ||||| ||| Sbjct 313729 TATGCAGTTGCAAAAATGTATGCTTATTGGATTACCGTA---AATTATAGAGAAGCATAT 313673 Query 161456 GGGATGCACGCCAGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACT 161515 || ||| || | | ||||||| |||| || ||||| || | | || || ||| Sbjct 313672 GGTATGTTTGCGTGCAATGGTATTTTATTTAATCATGAAAGTCCTTTAAGAGGAGAAACT 313613 Query 161516 TTCGTAACCCGTAAGATTACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGT 161575 || || || ||||| |||||||| | | || || ||| | |||||| | Sbjct 313612 TTTGTCACTCGTAAAATTACTAGAGCGGTTTCTAAAATGGCATTAGGTATGCAGGATAAT 313553 Query 161576 CTATACCTAGGTAATCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAG 161635 ||| |||| || || | | ||| |||||||||| ||||| |||| ||||| ||| Sbjct 313552 TTATTTTTAGGAAACTTAGATGCGAGAAGAGATTGGGGGCATGCAAAAGATTATGTTGAG 313493 Query 161636 GCTATGTGGTTGATGTTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGGT 161692 ||||||||| |||| || || || || ||||| || ||||| ||||| || ||| Sbjct 313492 GCTATGTGGCTGATTTTGCAGCAAGATCAACCTGAAGATTATGTAATTGCAACTGGT 313436 >seq436 Length=26271 Score = 84.2 bits (92), Expect = 3e-11 Identities = 195/290 (67%), Gaps = 3/290 (1%) Strand=Plus/Plus Query 161398 ATATGGC-GTAGCTAAACTCTATGGATATTGGAT-TGTAAAGAACTACAGAGAGAGTTAT 161455 |||| || || ||||||| | || ||||||||| |||| || || | || |||| Sbjct 14355 ATATAGCTGTTGCTAAACAATTTGCATATTGGATGTGTATC-AATTATCGTGAAGCTTAT 14413 Query 161456 GGGATGCACGCCAGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACT 161515 || || | || | | |||||| | || || || ||||| ||||| || || || Sbjct 14414 GGTATTTATGCATGCAATGGTATCTTGTTTAATCACGAGTCTCCACGTCGTGGACCTACA 14473 Query 161516 TTCGTAACCCGTAAGATTACTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGT 161575 ||||| || |||||||| ||| | | | ||||| | || |||| | || Sbjct 14474 TTCGTCACTCGTAAGATCACTCGATTCGTGGCACGTATCAAGACTGGACATGACGAGGTG 14533 Query 161576 CTATACCTAGGTAATCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATGTGGAG 161635 || ||| | ||||| | || | | || || ||||| ||||| |||||||| ||| Sbjct 14534 CTCTACTTGGGTAACATCAATGCCAAGCGTGACTGGGGCCATGCCCGTGACTATGTCGAG 14593 Query 161636 GCTATGTGGTTGATGTTACAACAGGAAACTCCTGATGACTATGTGATTGC 161685 || |||||||||||| | |||| || || || |||||||| ||||| Sbjct 14594 GCCATGTGGTTGATGCTGCAACGAGACCGACCAGAGGACTATGTCATTGC 14643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729807501026160