Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_027298.1 Length=36814 Score E Sequences producing significant alignments: (Bits) Value seq12655 91.5 3e-14 seq6494 86.0 1e-12 >seq12655 Length=260 Score = 91.5 bits (100), Expect = 3e-14 Identities = 124/172 (72%), Gaps = 1/172 (1%) Strand=Plus/Minus Query 189 GCCCAAACCACGCGCCCGACAATATCCAGGTCTTGTAACTGATCTTTGGGGACAGTCATT 248 ||||| || ||||| || | || |||||||| | |||| ||| |||||||| ||| Sbjct 194 GCCCATACTACGCGGCCAATTATCTCCAGGTCGTTCAACTTATCCCTGGGGACAACCATA 135 Query 249 TCTGTGTACGCCCGATTCTCGCTTATGATCGCAATCGATCCGTCAAACCTACGCTGTAGG 308 || ||| ||| ||||| || ||||| ||| || ||||| ||| ||||| || Sbjct 134 TCGCGGTAGGCCTTGTTCTCACTGATGATGTGAATAGACCCGTCGAACTGCCGCTGGAGC 75 Query 309 CGCTTGGCATACAGGTGATCCTGGAGGCGGATGACGTAAACAGCCTCGTCCC 360 | || ||||| || || || | || ||||||||||| |||||||| |||| Sbjct 74 CTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGCCTC-TCCC 24 >seq6494 Length=425 Score = 86.0 bits (94), Expect = 1e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 9078 AAAATCCACATCGCCAAGACCCAGCTCGGCATGGACGATGACACCTATCGCGCATTGTTG 9137 || |||||||||||||||| | || || |||| || || ||||| || || |||||| Sbjct 318 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTG 377 Query 9138 GCCCGCGTCGCGGGCGTGCGCTCTGCCAAGGACTTGGGGCCGCGCCA 9184 | |||||| ||||| ||||| || ||||| ||| || ||| ||||| Sbjct 378 GGCCGCGTGGCGGGTGTGCGTTCGGCCAAAGACCTGACGCCACGCCA 424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117664498815584