Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_027348.1 Length=73990 Score E Sequences producing significant alignments: (Bits) Value seq5955 96.9 2e-15 seq5294 96.9 2e-15 >seq5955 Length=632 Score = 96.9 bits (106), Expect = 2e-15 Identities = 121/163 (74%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 21961 CTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATCGCCAGCTACGCG 22020 || |||||||||||||| ||||||||||| || ||||| |||||||||||| |||||| Sbjct 338 CTGTATCAGCGCAGCGCCGACATGTTCCTCGGTGTGCCGTTCAACATCGCCTCCTACGCC 279 Query 22021 CTGCTGACGCACCTCATG-GCGGCCA--CGGTCGGCATGCAGGCCGAGAAGTTCATCTGG 22077 ||||||| | | ||| || ||| ||| ||| | || ||| | ||| ||||| Sbjct 278 TTGCTGAC---CATGATGATCGCCCAGCAGGTGGGCCTCGAGCCCGGAGACTTCGTCTGG 222 Query 22078 TCTGGCGGTGACTGCCACCTGTACTCGAACCACATGGACCAGG 22120 | ||||| ||||||||| | ||| || ||| | || |||| Sbjct 221 ACGGGCGGAGACTGCCACGTCTACGACAATCACGTCGATCAGG 179 >seq5294 Length=478 Score = 96.9 bits (106), Expect = 2e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 21949 CTGAGCTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATC 22008 || |||||| | | || |||||||||| ||||| |||||||||||||| ||||||||| Sbjct 249 CTCAGCTGCCAGTTGTACCAGCGCAGCGGCGACATCTTCCTGGGCGTGCCGTTCAACATC 308 Query 22009 GCCAGCTACGCGCTGCTGACGCACCTCATGGCG 22041 ||||||||||| ||||| || ||| | ||||| Sbjct 309 GCCAGCTACGCACTGCTCACCCACATGGTGGCG 341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 236604605121002