Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_027398.1 Length=38742 Score E Sequences producing significant alignments: (Bits) Value seq3951 167 6e-37 seq2342 109 1e-19 >seq3951 Length=514 Score = 167 bits (184), Expect = 6e-37 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 36748 ATGAGCAGAGTAACTGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCAGCCTGTCA 36807 |||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 352 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 411 Query 36808 TGGGCTGTTAATCATTACCGTGATAATGCAATCGCCTACAAAGAGCAGCGCGATAAA 36864 |||||||||||||||||||||||||| || || ||||||||| |||||||| ||| Sbjct 412 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAA 468 >seq2342 Length=4104 Score = 109 bits (120), Expect = 1e-19 Identities = 62/63 (98%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 20078 AATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 20137 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1789 AAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATATTGGT 1848 Query 20138 TAC 20140 ||| Sbjct 1849 TAC 1851 Score = 80.6 bits (88), Expect = 7e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 17787 ACTCCACCTTTTCATCAATCCAGTCCGCCAACCACTGCATCATTTCTCTGCGCTTAACG 17845 ||||||| |||||||||| ||| |||| | |||||||||||||||||||||||||| || Sbjct 118 ACTCCACTTTTTCATCAAGCCAATCCGTCCACCACTGCATCATTTCTCTGCGCTTATCG 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123833118396736