Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq5955 105 1e-17 seq93 98.7 2e-15 seq1087 84.2 3e-11 >seq5955 Length=632 Score = 105 bits (116), Expect = 1e-17 Identities = 176/252 (70%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 198329 CTTTCATGTCAGCTCTATCAACGCAGTGCGGATTTTTTCCTCGGCGTGCCGTTCAACATC 198388 || || |||||||| ||||| ||||| || || | |||||||| ||||||||||||||| Sbjct 350 CTCTCGTGTCAGCTGTATCAGCGCAGCGCCGACATGTTCCTCGGTGTGCCGTTCAACATC 291 Query 198389 GCGTCTTACGCATTACTCGTGCAC-ATGGTTGCCCAGCAGGTTAACATGGTGCCGGGCGA 198447 || || ||||| || || | || ||| | ||||||||||| | | | ||| || || Sbjct 290 GCCTCCTACGCCTTGCT-GACCATGATGATCGCCCAGCAGGTGGGCCTCGAGCCCGGAGA 232 Query 198448 TTTCATTTGGACGGGCGGTGACACACATCTCTACTCTAATCATCTGGAGCAGGCCAAGCT 198507 ||| | ||||||||||| ||| || ||||| ||||| | || |||| | Sbjct 231 CTTCGTCTGGACGGGCGGAGACTGCCACGTCTACGACAATCACGTCGATCAGGTGCGGGA 172 Query 198508 CCAGCTGACGCGTGAGCCGTTACCTTTACCGAAACTGATCATCAAGCGTAAACCGGAATC 198567 ||||| | |||||||| | || | |||| ||| || ||| || || ||||| Sbjct 171 GCAGCTCAGCCGTGAGCCCTACCCCTACCCGACGCTGCGTTTCGCGCGGAAGCCCGAATC 112 Query 198568 TATCTTCGATTA 198579 || |||| || Sbjct 111 GATTCTCGACTA 100 >seq93 Length=584700 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 197663 AAAGGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGAT 197722 ||||| || || || |||||||| ||| ||| ||||| |||||||||||||||| Sbjct 272910 AAAGGTGACCGAACAGGAACAGGAACGAAAAGTGTTTTTGGCTACCAGATGCGTTTTGAT 272851 Query 197723 TTGCGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCAT 197782 || || |||||||||| | || ||||| || |||||||| | || || ||| | Sbjct 272850 TTAAGTGAAGGTTTCCCAATGGTTACGACAAAAAAACTCCATTTAAAATCGATCATCTAC 272791 Query 197783 GAACTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTT 197842 ||| |||| ||||| | | || ||||| || | |||||||| | || || || ||| Sbjct 272790 GAATTGCTTTGGTTTTTAAAAGGAGATACAAATATTAAATATCTTAAGGAAAATGGAGTT 272731 Query 197843 ACCATTTGG 197851 | || ||| Sbjct 272730 AAAATCTGG 272722 >seq1087 Length=202632 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 197666 GGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTG 197725 ||||| ||||| || ||||| || | ||| || || || ||||||||| || ||| || Sbjct 83903 GGCGACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTG 83844 Query 197726 CGTAAAGGTTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGAA 197785 ||||| || | ||||| |||||||| || || || || ||||| || Sbjct 83843 TCGGCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAG 83784 Query 197786 CTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTACC 197845 |||||||||||||| | || || || |||| | ||||| | || |||||||| || Sbjct 83783 CTGCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACG 83724 Query 197846 ATTTGG 197851 || ||| Sbjct 83723 ATCTGG 83718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769064933140560