Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_027404.1 Length=167785 Score E Sequences producing significant alignments: (Bits) Value seq93 89.7 6e-13 seq10414 82.4 8e-11 >seq93 Length=584700 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 142119 ATTTGTGCTTCCTGATAAAAACCAAAGTAGCTCAGCAATGCAAGCTTTCCAGGCGAGCTT 142178 |||||| |||| |||||||||||| | || ||| | ||| | ||| || Sbjct 272758 ATTTGTATCTCCTTTTAAAAACCAAAGCAATTCGTAGATGATCGATTTTAAATGGAGTTT 272817 Query 142179 TTTAGTTGTTACTGCAGGAAAACCTTTACTTAAATCCCAGCGTAATTTAGTACCGAACAA 142238 ||| || || || || ||||||| ||||||||| | || | | | ||| | || || Sbjct 272818 TTTTGTCGTAACCATTGGGAAACCTTCACTTAAATCAAAACGCA-TCTGGTAGCCAAAAA 272876 Query 142239 AGCAATT-GTTCCTGTGCCTGTTCGATCATCGGTTTCATAGCCATTTTCAAAAATGTCTT 142297 | || |||||||| |||||||| ||| | ||| || ||| ||||| |||| || || Sbjct 272877 CACTTTTCGTTCCTGTTCCTGTTCGGTCACCTTTTTGATTGCCGTTTTCTAAAACGTATT 272936 Query 142298 TAATTAAATCTTGGTATTGTTTCATT 142323 | | ||||||| ||||||||||||| Sbjct 272937 TTACTAAATCTAAGTATTGTTTCATT 272962 >seq10414 Length=692 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 68755 GCGGCAGGATTTGAACCTGCGACATTCTGCTCCCAAAGCAGACGCTCTACCAAACTGAGC 68814 ||| ||||| ||||||||||||| | | ||||||||||| | |||||||||||||||||| Sbjct 432 GCGACAGGAGTTGAACCTGCGACCTCCCGCTCCCAAAGCGGGCGCTCTACCAAACTGAGC 491 Query 68815 TAC 68817 ||| Sbjct 492 TAC 494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536694209456400