Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq232 172 4e-38 seq2491 123 2e-23 seq2141 93.3 3e-14 >seq232 Length=384298 Score = 172 bits (190), Expect = 4e-38 Identities = 573/879 (65%), Gaps = 32/879 (4%) Strand=Plus/Plus Query 43709 TTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGG 43768 ||||| || || ||||||| || ||| || ||| |||||| | || || ||| Sbjct 338625 TTTCCTATCAAACATCATGATATTTGGGAATGGTATAAAAAAATGGAAGCTAGTTTCTGG 338684 Query 43769 ACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAA---AACCA 43825 || || |||||| | ||||| | | || ||| || |||||| | || || || | Sbjct 338685 ACTGCCGAAGAAATCGATTTACATCAGGATTTAACAGATTGGAATA-ATAAACTTAATGA 338743 Query 43826 CAA-GAAAAACATTTTAT--ATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATA 43882 | | ||| |||| || | | | |||| || ||||||||||| ||||| || Sbjct 338744 CGACGAACGTTATTTCATTAAACATA--TTTTAGCATTTTTTGCTGCTTCAGACGGAATC 338801 Query 43883 GTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGT 43942 || || |||||| ||| | |||| | || ||||||| | |||||| | Sbjct 338802 GTAAACGAAAATCTGGCTGAGAATTTTGTTAACGAGGTTCAATACGCCGAAGCAAAGTTC 338861 Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 |||||||| || || || || || |||||||| || | || | | | || Sbjct 338862 TTTTATGGTTTCCAGATCATGATGGAGAATATTCACAGTGAGACTTATTCTTTATTAATT 338921 Query 44003 GATACGTACATCAAAGATGG-GCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGT 44061 |||||||| | ||||| | ||| | || || | ||||||||||| ||||| | Sbjct 338922 GATACGTATGTAAAAGACGAAGCAGAAAAATCAGAG-TTGTTTAATGCTTTAGAAGTTTT 338980 Query 44062 ACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTT 44121 ||||| ||||| | |||||||| ||||| | |||||||| | || |||||| || Sbjct 338981 TCCTGCAATTAAGAAAAAAGCAGAATGGGCTTTAAAATGGATCGAATC---TGATTCATT 339037 Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGC 44181 || ||| |||| | || ||||| | || ||||| || || || || ||| | || Sbjct 339038 TGCTGAAAGACTAATTGCTTTTGCTGCAGTTGAAGGAATCTTTTTCTCGGGAGCTTTCTG 339097 Query 44182 GGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241 | || | |||||| || ||||| ||||| ||||| || || || || || ||||| || Sbjct 339098 TTCAATTTATTGGTTGAAAAAACGTGGTTTAATGCCAGGTTTAACATTCTCTAATGAATT 339157 Query 44242 AATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGA-------T 44294 || |||||| ||||| ||||||| |||||||| | | | || || | Sbjct 339158 GATTTCTCGTGACGAAGGTGTACATTGTGATTTTGC--GGT--TCACCTGCACAATCACC 339213 Query 44295 ATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAA 44354 || | | | || | || || | | ||||| ||| ||| |||| || || || Sbjct 339214 ATTTGGTAAACAAAGTGC---CAAAAGATAGAATTAAAGAAATTATTGTCGATGCTTTAG 339270 Query 44355 AGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAAC 44414 | || ||| | ||||||| ||| | | | || |||| |||||| || ||||| | Sbjct 339271 ATATCGAAAGACAATTTATCACAGAATCTCTTCCGGTAAGTTTAATTGGTATGAACGCTG 339330 Query 44415 TTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCG 44474 | | |||| || ||| | || | | |||| ||| | ||| | | ||| |||| || | Sbjct 339331 GTCTTATGACACAGTATTTAGAGTTCGTTGCCGATAGATTATTAGTAGAATTGGGCTGTG 339390 Query 44475 ATAAACACTATATTGTACA--AAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGG 44532 | | || | || ||| || || ||||| ||||| | ||||| | | || Sbjct 339391 --AGCGTGTTTACGGATCAGCAAATCCATTCGATTTCATGGATATGATTTCACTTCAGGG 339448 Query 44533 CAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 ||||| || || ||||||||||| |||| ||| ||||| Sbjct 339449 AAAAACTAATTTCTTTGAAAAACGTGTTGCAGAGTATCA 339487 >seq2491 Length=10632 Score = 123 bits (136), Expect = 2e-23 Identities = 472/728 (65%), Gaps = 30/728 (4%) Strand=Plus/Plus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT---GCG 43912 || ||||||||||| || ||||| || || |||||||| | | ||| || | | Sbjct 4151 GCTTTTTTTGCTGCAAGTGACGGCATTGTAAATGAAAACCTTGC-AGTGAACTTCATGAG 4209 Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 | ||||| || | || ||||| || ||||||||||| || || || || ||||| Sbjct 4210 C--GAAGTACAGCTTCCCGAAGCCCGTTGTTTTTATGGCTTCCAGATCATGATGGAAAAC 4267 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAG 44032 || || || |||| || || ||||| ||||| || || |||||| | || || Sbjct 4268 ATCCACTCTGAAACCTATGCGCTGCTGATCGATACCTATATTAAAGATCCTGAAGAAAAA 4327 Query 44033 CATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCC 44092 | | |||| |||| |||| || || ||| | || | |||||||| ||||| Sbjct 4328 GACAGGCTGTTCCATGCCGTAGAGACGGTTCCTTGTGTAAAGAAAAAAGCAGAATGGGCA 4387 Query 44093 CTTAAATGGATAAATTC---AAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTT 44149 | ||||| | |||| |||| ||||| | || || || || | Sbjct 4388 TTGCGCTGGATTGAGGGCGGAAAT------TTTGCCGAACGTTTGGTGGCTTTCGCCGCA 4441 Query 44150 GTGGAAGGCATTTTCTTTT-CAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGG 44208 ||||||||||||||||| | ||| | | || | || || ||||| || ||| |||| Sbjct 4442 GTGGAAGGCATTTTCTTCAGCGGGAGCTTCTGTT-CGATCTTCTGGTTGAAAAAAAGAGG 4500 Query 44209 TTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTG 44268 ||||||| ||| | || ||| |||||||| || | ||||| || | ||||| Sbjct 4501 CCTGATGCCAGGGCTAACCTTTAGTAATGAGTTGATTTCCAGAGATGAGGGGATGCATTG 4560 Query 44269 CGATTTTGCTTGCTTG-TTACTTGGATA-TCTAGGAGACGATAAGCCTTCATGTAAGACA 44326 || ||||| ||| || || | || || | | | | |||| | ||| | Sbjct 4561 TGAATTTGCCTGCCTGCTTTATAAAATGCTCAAAAATAAACTGAGCCA----GGAAGTCG 4616 Query 44327 ATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTA 44386 | | || ||| | || || ||| | || ||| | |||||||| ||| || || Sbjct 4617 TTCATGGA-ATTATCCGCGACGCGGTAGAAATCGAAAAGGAATTTATTACAGATGCCTTG 4675 Query 44387 CCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCA 44446 || || | || || ||||||| | ||||| || |||||||| | ||||| Sbjct 4676 CCGGTTGCCCTGATCGGGATGAATGCAAAACTGATGTCACAGTATATTGAGTTTGTTGCA 4735 Query 44447 GATCGTTTACTTTTGGAACTGGGTTGCGATAA-ACACTATATTGTACAA--AACCCGTTT 44503 || | | || ||||||||||| ||| | | ||||| | | | || |||||| Sbjct 4736 GACAGATGGCTGCAGGAACTGGGTT---ATACCAAAATATATCATGCCACCAATCCGTTT 4792 Query 44504 GATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGA 44563 ||||||||||| | || || || |||||||||| || || ||||| ||||| || || Sbjct 4793 GATTTTATGGAGATGATCTCCCTGCAAGGCAAAACCAATTTCTTTGAGAAACGTGTGGGT 4852 Query 44564 GAATATCA 44571 || ||||| Sbjct 4853 GATTATCA 4860 >seq2141 Length=1138 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 || ||||| || |||||||| || || || || |||||||| || |||| | | || Sbjct 213 GTCTTGGCTTTCTTTGCTGCCAGTGATGGTATCGTCAATGAGAACTTGGCCACCAGATTC 154 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | ||| || ||| | || ||||| ||||||| ||||| || ||||||||||| ||| Sbjct 153 ATGTCAGAGGTCCAAATCCCTGAAGCTAGATGTTTCTATGGTTTCCAAATTGCCATTGAA 94 Query 43970 AATATTCATTCGGA 43983 ||||||||||| || Sbjct 93 AATATTCATTCAGA 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397391177658910