Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq3933 2394 0.0 seq2342 1779 0.0 seq10411 197 5e-46 seq3951 98.7 4e-16 >seq3933 Length=4962 Score = 2394 bits (2654), Expect = 0.0 Identities = 1383/1419 (97%), Gaps = 1/1419 (0%) Strand=Plus/Minus Query 5116 GTACTGTTTTCCCCAGGCCAGAGCCTTAGCGTTAACTTCCGGAGCCACACCGGTGCAAAC 5175 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 4536 GTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGGTGCAAAC 4477 Query 5176 CTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGATCG 5235 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 4476 CTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGAGCG 4417 Query 5236 GGGTTTTGCTATTACGTTGTGAATTTCTGAAGCTGTGATGACGCCGAGCCGTAATTTGTG 5295 ||| |||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 4416 GGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTTGTG 4357 Query 5296 CCACGCATCATCTCCCTGTTCGACAGCTCTCACGTCGATCCCAGTACGCTGCAGGATAAT 5355 ||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 4356 CCATGCATCATCCCCCTGTTCGACAGCTCTCACGTCGATCCCGGTACGCTGCAGGATAAT 4297 Query 5356 GTCCGGTGTCATGCTGCCACCTTCTGTTCAGTGGCTTTTTGTTTCAGGAATCCAAGAGCT 5415 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 4296 GTCCGGTGTCATGCTGCCACCTTCTGCTCAGTGGCTTTCTGTTTCAGGAATCCAAGAGCT 4237 Query 5416 TTTACTGCTTCGGCCTGTGTCAGTTCTGACGATGCACGAATGTCGCGGCGAAATATCTGG 5475 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 4236 TTCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGTCGCGGCGAAATATCTGG 4177 Query 5476 GAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCGATCAGCAGAGTGTTT 5535 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4176 GAACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCGATCAGCAGAGTGTTA 4117 Query 5536 ATTTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTTCCGGCTGACGTTCTGCA 5595 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4116 ATCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTTCCGGCTGACGTTCTGCA 4057 Query 5596 GTGTATGCGGTATTTTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAAT 5655 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4056 GTGTATGCGGTATTTTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAAT 3997 Query 5656 CCGAAGGCGAGACGGGCACACTGAATCATGGCTTTATGACGTAACATCCGTTTGGGATGC 5715 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3996 CCGAAGGCCAGACGGGCACACTGAATCATGGCTTTATGACGTAACATCCGTTTGGGATGC 3937 Query 5716 GACTGCCACGGCCCCGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTTCGCGGCGGCAT 5775 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3936 GACTGCCACGGTCCGGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTTCGCGGCGGCAT 3877 Query 5776 TCATCCATCCACTCGGTAACGCAGATCGGATGATTACGGTCCTTGCGGTAAATCCGGCAT 5835 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 3876 TCATCCATCCACTCGGTAACGCAGATCGGATGATTGCGGTCCTTGCGGTAAATCCGGCAT 3817 Query 5836 GTGCAGGATTCATTGTCCTGCTCAAAGTCCATGCCATCAAACTGCTGGTTTTCGTTGATG 5895 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 3816 GTGCAGGATTCATTGTCCTGCTCAAAGTCCATACCATCAAACTGCTGGTTTTCATTGATG 3757 Query 5896 ATGCGGGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAG 5955 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3756 ATGCGGGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAG 3697 Query 5956 GCGTAAATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGATCAGCAATGCG 6015 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3696 GCGTAAATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGATCAGCAATGCG 3637 Query 6016 ATGAACTGCGCATCGCTGGCATCACCTTTAAATGCCGTCTGGCGAAGAGTGGTGATCAGT 6075 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 3636 ATGAACTGCGCATCGCTGGCATCGCCTTTAAATGCCGTCTGGCGAAGAGTGGTGATCAGT 3577 Query 6076 TCCTGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCTTCCCAGCCAGCGTTGCG 6135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3576 TCCTGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCTTCCCAGCCAGCGTTGCG 3517 Query 6136 AGTGCTGTACTCATCCGTTTTATACCTCTGAATCAATATCAACCTGGTGGTGAGCAATGG 6195 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 3516 AGTGCTGTACTCATCCGTTTTATACCTCTGAATCAATATCAACCTGATGGTGAGCAATGG 3457 Query 6196 TTTCAACCATGTACCGGATGTGTTCTGCCATGCGTTCCTGAAACTCAACATCGTCATCAA 6255 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 3456 TTTCAACCATGTACCGGATGTGTTCTGCCATGCGCTCCTGAAACTCAACATCGTCATCAA 3397 Query 6256 ACGCACGGGTAATGGCTTTTTTGCTGGCCCCGTGGCGTTGCAAATGATCGATGCATAGCG 6315 | |||||||||||||||||||||||||||||| |||||| |||||||||||||| |||| Sbjct 3396 ATGCACGGGTAATGGCTTTTTTGCTGGCCCCGCAGCGTTGTAAATGATCGATGCAGAGCG 3337 Query 6316 ATTCAAACAGGTGCTGGGGCAGGCCTTTTTCCATGTCGTCTGCCAGTTCTGCCTCTTTCT 6375 ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 3336 ATTCAAACAAATGCTGGGGCAGGCCTTTGTCCATGTCGTCTGCCAGTTCTGCCTCTTTCT 3277 Query 6376 CTTCACGGGCGATCTGCTGGTAGTGACGCGCCCAGCTCTGAGCCTCAAGACGATCCTGAA 6435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3276 CTTCACGGGCGATCTGCTGGTAGTGACGCGCCCAGCTCTGAGCCTCAAGACGATCCTGAA 3217 Query 6436 TGTAATAAGCGTTCATGGCTGAACTCCTGAAAATGGCTGTGAAAATATCGCCCGCGAAAT 6495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3216 TGTAATAAGCGTTCATGGCTGAACTCCTGAAAATGGCTGTGAAAATATCGCCCGCGAAAT 3157 Query 6496 GCCAGGCTGATTAGGAAAACAGGAAA-TGGGGTTAGTGA 6533 ||||||||||||||||||||| |||| ||||||||||| Sbjct 3156 GCCAGGCTGATTAGGAAAACAAGAAAGGGGGGTTAGTGA 3118 Score = 621 bits (688), Expect = 1e-173 Identities = 364/377 (97%), Gaps = 0/377 (0%) Strand=Plus/Minus Query 4661 TACCCGGATATTATCGTGAGGATGCTTCATTACCATTGCTCCCCATATACAAAACCAATT 4720 ||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| Sbjct 4962 TACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATT 4903 Query 4721 TCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC 4780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4902 TCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC 4843 Query 4781 ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGG 4840 ||||| ||||||| |||||||| |||||||||||||||||||||||||||||| || ||| Sbjct 4842 ATGTAATTTTCATCCCGCTCAACCACGACATAATGCAGGCCTTCACGCTTCATTCGTGGG 4783 Query 4841 TCATAGTTGGCAAAGTACCAGGCATCTTTTCGTGTCACCCACATGCTGTACTGCACCTGG 4900 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 4782 TCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGG 4723 Query 4901 GCCATGTAAGCCGATTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGG 4960 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 4722 GCCATGTAAGCCGACTTTATGGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGG 4663 Query 4961 GAGGTAAACGGGCATTTCAGCTCAAGGCCGTTGCCGTCACTGCATAAACCATCGGGAGAG 5020 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 4662 GAGGTAAACGGGCATTTCAGTTCAAGGCCGTTGCCGTCACTGCATAAACCATCGGGAGAG 4603 Query 5021 CAGGCGGTGCGCATACT 5037 ||||||||||||||||| Sbjct 4602 CAGGCGGTGCGCATACT 4586 >seq2342 Length=4104 Score = 1779 bits (1972), Expect = 0.0 Identities = 1049/1091 (96%), Gaps = 0/1091 (0%) Strand=Plus/Plus Query 3719 TAATTAATTTCGCTCACTTCGAACCTCTCTGTTTACTGATAAGCTCCAGATCCTCCTGGC 3778 || ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 3014 TAGTTAATTTCGCTCACTTCGAACCTCTCTGTTTACTGATAAGCTCCAGATCTTGCTGGC 3073 Query 3779 AACTTGCACAAGTCCGACAACCCTGAACGGCCAGGCGTCTTCGCTCATCTATGGGATCGC 3838 |||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| Sbjct 3074 AACTGGCACAAGTCCGACAACCCTGAACGGCCAGTCGTCTTCGTTCATCTATCGGATCGC 3133 Query 3839 CACACTCGCAACAATGAGTGGCAGATATAGCCTGGTGGTTCAGGCGGCGCATTTTTATTG 3898 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3134 CACACTCACAACAATGAGTGGCAGATATAGCCTGGTGGTTCAGGCGGCGCATTTTTATTG 3193 Query 3899 CTGTGTTGCGCTGTAATTCTTCAATTTCTGATGCTGAATCAATGAGGTCTGCCATCTTTC 3958 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 3194 CTGTGTTGCGCTGTAATTCTTCAATTTCTGATGCTGAATCAATTATGTCTGCCATCTTTC 3253 Query 3959 ATTAATCCCTGAATTGTTGGTTAATACGCTTGAGGGTGAATGCGAATAATAAAAAAGGAG 4018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3254 ATTAATCCCTGAATTGTTGGTTAATACGCTTGAGGGTGAATGCGAATAATAAAAAAGGAG 3313 Query 4019 CCTGTAGCTCCCTGATGATTTTGCTTTTCATGTTCACCGTTCCTTAAAGACGCCGTTTAA 4078 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 3314 CCTGTAGCTCCCTGATGATTTTGCTTTTCATGTTCACCGTTCCTTAAAGACGCCGTTCAA 3373 Query 4079 CATGCCGATCGCCAGACTTAAATGAGTCGGTGTGAATCCCATTAGCGTTACCGTTTCGCG 4138 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 3374 CATGCCGATCGCCAGGCTTAAATGAGTCGGTGTGAATCCCATCAGCGTTACCGTTTCGCG 3433 Query 4139 GTGCTTCTTCAGTACGCTACGGCAAATGTCATCGACGTTTTTATCCGGAAACTGCTGTCT 4198 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3434 GTGCTTCTTTAGTACGCTACGGCAAATGTCATCGACGTTTTTATCCGGAAACTGCTGTCT 3493 Query 4199 GGCTTTTTTGATTTCAGAATTAGCCTGACGGGCAATGCTGCGAAGGGCGTTTTCCTGCTG 4258 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 3494 GGCTTTTTTGATTTCAGAATTAGCCTGACGGGCAATGCTGCGAAGGGCGTTTTCTTGCTG 3553 Query 4259 AGGTGTCATTGAACAAGTCCCATGTCGGCAAGCATAAGCACACAGAATATGAAGCCTGCT 4318 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 3554 AGGTGTCATTGAACAAGCCCCATGTCGGCAAGCATAAGCACACAGAATATGAAGCCCGCT 3613 Query 4319 GCCAGAAAAATGCATTCTGTTGTTGTCATGCCGGGTCTCTCTCGTTTGCTTCTGCTTTCG 4378 ||||||||||||||||| || |||||||| || |||||||||| | |||||||||||||| Sbjct 3614 GCCAGAAAAATGCATTCAGTGGTTGTCATACCTGGTCTCTCTCATCTGCTTCTGCTTTCG 3673 Query 4379 CCGCCATCATTTCCAGCTTTTGTGAAAGGGATGTGGCTAACGTATGAAATTCTTCGTCTG 4438 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 3674 CCACCATCATTTCCAGCTTTTGTGAAAGGGATGCGGCTAACGTATGAAATTCTTCGTCTG 3733 Query 4439 TTTCTACTGGTATTGGCACAAACCTGACTCCAATTTGAGCGAGGCTATGTGCCATCCCGA 4498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 3734 TTTCTACTGGTATTGGCACAAACCTGACTCCAATTTGAGCGAGGCTATGTGCCATCTCGA 3793 Query 4499 TACTCGTTCTTAATTCAACAGGAGATGCTTTGTGCATACAGCCCCTCGTTTATTATTTAT 4558 ||||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||| Sbjct 3794 TACTCGTTCTTAACTCAACGGGAGATGCTTTGTGCATACAGCTCCCCGTTTATTATTTAT 3853 Query 4559 CTCTTCAGCCAGCCGCTGTGCTTTCAGTGGATTTCGGATAACAGAAAGGCCGGGAAATAC 4618 ||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct 3854 CTCCTCAGCCAGCCGCTGTGCTTTCAGGGGATTTCTGATAACAGAAAGGCCGGGAAATAC 3913 Query 4619 CCAGCCTCGCTTTGTAACGGAGTAGACGAAAGTGATCGTGCCTACCCGGATATTATCGTG 4678 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 3914 CCAGCCTCGCTTTGTAATGGAGTAGACGAAAGTGATCGCGCCTACCCGGATATTATCGTG 3973 Query 4679 AGGATGCTTCATTACCATTGCTCCCCATATACAAAACCAATTTCAGCCAGTGCCTCGTCC 4738 ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 3974 AGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCC 4033 Query 4739 ATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGC 4798 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 4034 ATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGC 4093 Query 4799 TCAATCACGAC 4809 |||| |||||| Sbjct 4094 TCAACCACGAC 4104 >seq10411 Length=590 Score = 197 bits (218), Expect = 5e-46 Identities = 166/202 (82%), Gaps = 5/202 (2%) Strand=Plus/Plus Query 28348 CTGCCCAATTCCAGAAACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGT 28407 ||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2 CTGTCCAATTCCCGAAACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGTTACTGCTGT 61 Query 28408 CTGTTTGTTTTGAACAGTAAACGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGC 28467 | |||||||| |||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 62 CGGTTTGTTTCCAACAGTAAACGTCTGTTGAGCACATCCTGTAATAAGCATTGCCAGAGC 121 Query 28468 AGTAGCGAGTAGCAtttttttCATGGTGTTATTCCCGATGC-TTTTTGAAGTTCGCAGAA 28526 | || | | |||||||||||| | |||| | ||| || || || |||||| Sbjct 122 GGCAGAAAACAACATTTTTTTCATCTTATTATCC----TGCATTGTTAAAAACGGCAGAA 177 Query 28527 TCGTATGTGTAGAAAATTAAAC 28548 || |||||| | |||||||| Sbjct 178 TCCTATGTGACAACAATTAAAC 199 Score = 138 bits (152), Expect = 4e-28 Identities = 145/183 (79%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 28604 AGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAA 28663 || |||| || |||||| ||||||||| |||||| ||| || ||||| ||||||||| Sbjct 328 AGCTGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCC-GACGGGGAA 386 Query 28664 CTTCT-CTGCGGGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTT 28722 | || ||||| ||||||||||| ||||||||||||||||||||||||||||| | | Sbjct 387 TTCCTTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTG 445 Query 28723 TTCACGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAAC 28782 | || ||| | || | || ||| | || ||| | ||||||||| ||||||||||||| Sbjct 446 CTGAC-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAAC 502 Query 28783 CGG 28785 ||| Sbjct 503 CGG 505 >seq3951 Length=514 Score = 98.7 bits (108), Expect = 4e-16 Identities = 78/94 (83%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 27771 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGCGATAAAAAAGCCAGAGAG 27830 || ||||||||||| ||||| | ||||||||||| |||||||| ||||| |||||||| Sbjct 421 AATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA 480 Query 27831 CTGGAACAGGCGAATGCCACCATTACTGACATGC 27864 ||| | | |||||| || | ||||||||||||| Sbjct 481 CTGAAGCTGGCGAACGCGGCAATTACTGACATGC 514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184415489646276