Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq32 235 7e-57 seq341 138 1e-27 seq915 109 7e-19 seq702 102 1e-16 seq6801 96.9 4e-15 seq277 95.1 1e-14 seq823 89.7 6e-13 >seq32 Length=13759 Score = 235 bits (260), Expect = 7e-57 Identities = 1126/1760 (64%), Gaps = 66/1760 (4%) Strand=Plus/Plus Query 117843 TAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTG 117902 |||||||| || ||||| || |||| |||||| || || | |||||||||| | |||| Sbjct 2795 TAGTACATGCCAGTCTTAAGACCCTTCTTCCATGCGTAGAAGTGCATTGAGGTGAGCTTG 2854 Query 117903 GAGAGGGTTGGACTTTCCA-TGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961 | | | |||| || || | |||| ||| | || ||||||||||||||| || Sbjct 2855 GCAAAG-TTGGGCTCGGCAATAAAGACGTTGAATGACTGTGATTGATCGATGAAGGCACC 2913 Query 117962 CCGATCCGCCGCCATATCAATCACA-TCCTTCATCTTGATTTCCCACACAGTCCTGTAGA 118020 ||||| || ||||| ||||| | | | | | | ||| ||||| |||||| |||| | Sbjct 2914 ACGATCGGCAGCCATGTCAATGAGACTACGTTGACG-GATCTCCCAGACAGTCTTGTACA 2972 Query 118021 GGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCA 118080 | ||| | || || ||||| | | || |||||||| |||| ||| | | Sbjct 2973 ACTCCTTCAAGTCCTCGGGGATGCCTGGTACGTTCTGGATGGAACCACGG---TTGGCGA 3029 Query 118081 TGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGAT 118137 ||| | | |||||| || | ||| | |||| ||||||| | | | | Sbjct 3030 TGATGTGGTTCTTCATCTCTGGGGTCCACAAGCCAAGGGCCATGAGATCGGCAAGCAACT 3089 Query 118138 GCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTG 118196 |||| ||||| || ||||| || || | || | ||| ||||| |||| ||| Sbjct 3090 GCTTGTTGACGACGGTGAACTCTCCAGCCAACACACGACG-AGAGTAGATGTTGGAGGTG 3148 Query 118197 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 118256 |||||||| |||||||| ||||| || | ||| || | || ||||| ||||||||||| Sbjct 3149 TATGGCTCGAAGCACTCGTTGTTGCCGAGGATCTGCGAGGTTGAGGCAGTGGGCATGGGG 3208 Query 118257 GCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAG 118316 || ||||| | | ||| |||||||| || | ||| |||||||| | |||| Sbjct 3209 GCAATGAGCAAGGAGTTGCGGAGACCGTTCTTGACGATGTTGGCCTTGAGACCAGTCCAG 3268 Query 118317 TCGTA--GTTGAGCTTTGTCTCCCCCTG-CCACATATCAAACTGGAGGATACCTTGGGAC 118373 || | | | | | | | || | |||||| || | ||||||||||| | ||| Sbjct 3269 TCCCAACGAGGGGAGGGGACGACACCGGGCCACATGTCGTATTGGAGGATACCCTTGGAG 3328 Query 118374 GCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCC 118433 || || ||||| || ||||||| | || | | | |||| ||| | || Sbjct 3329 GCGGGTGATCCAGGGAAGCTCTCATAGGAACCTTGCTCGACAGCCATCTCGTTGGACGAG 3388 Query 118434 TCGAGGGCTGCGTGATACATTGTTTCAAAAATGC-------GAGCATT-CATTGCCTTGG 118485 |||||| || || || || ||| ||| ||| | | || ||| | Sbjct 3389 GTGAGGGCGGCAAAGTATATGGTCTCAGCAATCTCCTTGTTGAGGACTGCAGCGCCA--G 3446 Query 118486 CCTCGTCGGAAT-CAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 118544 | |||| | ||||||| || || || || ||||| ||||||||||||| Sbjct 3447 CAGAGTCGAAGGGCAAACGCAAGGCG-------ATGAAGACATCAGCGAGACCTTGGATT 3499 Query 118545 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAA 118604 || | || || || || || | ||| || || ||||| ||| ||||| || | Sbjct 3500 CCAATACCGATGGGACGGTGACGCATGTTGGAGCGACGAGCCTCCTCGACGGGGTAGTAG 3559 Query 118605 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC-ATGAAGCTT 118663 || | ||||| | | | || || ||| |||||| ||||| | || | ||| | Sbjct 3560 TTGCGGTCGATGATCTTGTTGAGGTTTCTGGTGATGACCTTGACCACATCGAACAAGTGT 3619 Query 118664 T-----TCGTAAT-------CAAAACTGCGAGTCT--CTTCATTGACATACTTAGGAAGG 118709 | ||| | | | | ||| | | | || ||||||||||| || ||| Sbjct 3620 TGGTGGTCGAAGTAGGCGGGCTCACCTGGTTGCTTGCCCTCCTTGACATACTTGGGCAGG 3679 Query 118710 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 118769 ||||| || |||| || || |||| ||| || |||||| | || || || Sbjct 3680 GCGATCGAGGCCAAGTTGCAAACAGCAACCTCCTCTGGTGAAGTGTATTGGATGATCTCA 3739 Query 118770 GTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 118829 ||||||||||| || | |||||||| | ||| | ||| || ||||| | || || Sbjct 3740 GTGCACAAGTTGGAGCATGAGATGGTGCCGAGGTTTTGTTGGTTGGACTTGGCATTGCAT 3799 Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889 ||||||||||| | ||||| || || || ||||| | ||||||| || || || | Sbjct 3800 GCATCCTTGTACAAGATGTAGGGAGTACCAGTCTCGATCTGGGACTCGATGATGGCGAAC 3859 Query 118890 CAGACATCGGCAGC--TGGCACAGTGGCGTTGGCTCGCCCCTCTT--CCTCGTACTTTGT 118945 || | ||| ||| || | | ||| || || | |||||||||| Sbjct 3860 CAAAGATCTTGAGCCTTGACCACCTTGCG-GGGAAGACCTGGGGTGGCCTCGTACTTCAA 3918 Query 118946 GTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAG-CCCTGGTGCCTTATCTGGGC 119004 ||| | | | | ||||||| || || | ||| |||| | |||| | |||| Sbjct 3919 GTACAAGTCGTTGAACTCTTGGCCGTACTTGTCAGCGAGACCCTTG-GCCTCGTTGGGGC 3977 Query 119005 AGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGA 119064 |||| | | ||| | || |||||| |||| ||||||||| ||||| ||||||| Sbjct 3978 AGAACAATGCCCACTCCTCATTGCGCTCAACACGCTCCATGAAGAGATCTGGAATCCAGA 4037 Query 119065 GCGCCGAGAAGAGATCCCGACAGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAACTC 119122 | || |||| | || || ||| || ||| || | || || || || | || Sbjct 4038 GGGCATAGAACAAGTCACG--AGCACGCATCTCCTCCTTGCCGTGGTTCTTGCGGAGGTC 4095 Query 119123 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG 119182 | || || | || || |||||||| || || ||||| || || | || ||||| || Sbjct 4096 GAGGAACTCAAAGACGTCGGCGTGCCATGGCTCGAGGTAGACTGCAAATGCACCCTTGCG 4155 Query 119183 ---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAAT 119239 | ||| | |||| ||||| | |||||| |||| || ||||| ||||| || | Sbjct 4156 CTTTCCGCCACCTTGGTCGACATAGCGGGCAGTGTCGTTGAACACACGGAGCATGGGGAC 4215 Query 119240 GATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTG 119299 | ||| | ||| ||| || || || || || || || | || | ||| Sbjct 4216 TAGACCGTTGGAGGTGCCGTTGGTGCCGCGGATGTAGGAGCGGGCAGCACGGATCTTGTG 4275 Query 119300 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCC 119359 | || ||||| || || || |||| ||||| | || || | | |||| || | Sbjct 4276 CACAGCAATGCCAATGCCTCCAGCAGACTTGGAGATGAGAGCACATTGCTTGAGTGTGTC 4335 Query 119360 GTAGATCCCATCGATCGAGTCACCCTT-ATTTGCGATGAGGAAGCAGCTCGACATTTGAG 119418 |||||| || ||||| ||||| |||| ||||| || |||||||||| ||||| || | Sbjct 4336 GTAGATACCCTCGATGGAGTCGTCCTTCATTTG-GACGAGGAAGCAGGAGGACATCTGGG 4394 Query 119419 GCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGAC 119477 | ||| || ||||| ||||| || || || || || || |||| || || || ||| Sbjct 4395 GATAGGGGGTGCCAGCATTGAACAGGGTGGGAGTGGCATGAGTGAA-GTATCTCTGTGAC 4453 Query 119478 ATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACC 119537 | || |||||| | | | | || |||||| || ||||| ||||| | || || Sbjct 4454 AAGAGGTGGTAGGTGCCGATGGCAGCCTCAATGTCGTCGCCGTGGATACCAAGGGACACA 4513 Query 119538 CGCATAAACATGTATTGGGG 119557 ||||| || | || |||||| Sbjct 4514 CGCATCAAGAGGTGTTGGGG 4533 >seq341 Length=37664 Score = 138 bits (152), Expect = 1e-27 Identities = 291/429 (68%), Gaps = 19/429 (4%) Strand=Plus/Minus Query 14053 GGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCG 14112 |||||||| |||||| || |||||||| || |||||||| | || ||||| || | Sbjct 18856 GGTGATCTGACGATCGAAACGACCTGGACGAAGGAGGGCTTGATCGAGGATGTCGGGTCT 18797 Query 14113 GTTCGTCGCCGCGATGACAACGATGCCCGTCTC-GTTATCAAAGCCATCCATCTCAGTCA 14171 ||| || || || | ||||||| || || | | | || |||||||||||| | Sbjct 18796 GTTGGTTGCAGCAAACACAACGACATCCTTCAATGGTGTGAAT-CCATCCATCTCAACGA 18738 Query 14172 AGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTG---- 14227 ||| || || | || | || || ||||| || || | | | | || | || Sbjct 18737 GGAGCTGGTTAAGTGTGTTCTCACGCTCATCGTT-GCTGCCTGAGAAGCCTCCCTTGCCA 18679 Query 14228 CGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGG 14287 || ||| | ||| ||||| |||||||| || | ||| || ||| ||| | ||| Sbjct 18678 CGGGCACGACCAATGGCATCAATCTCATCGATAAAGATGATGCAGGGTGCATTCTTGCGG 18619 Query 14288 GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAA 14347 || ||||||| || ||||| | | ||| ||||| ||||||||||||||||| Sbjct 18618 GCCTGATCAAAGAGGTCACGCACACGAGCAGGACCTACACCAACAAACATCTCCACAAAG 18559 Query 14348 TTGGCGGCGGAACA-----TTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGG 14401 | | |||| ||| || ||| |||||||| | ||||| ||| |||| | Sbjct 18558 T------CTGAACCACTGGTTGAGAAGAATGGGACGTTGGCCTCACCAGCGGTGGCCTTG 18505 Query 14402 GCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTG 14461 ||||| | |||||| || || ||||| ||| |||| | |||||||||||||||| || Sbjct 18504 GCGAGCAAGGTCTTACCAGTGCCTGGGGGACCTACGAGGATGGCACCACGTGGGATCTTG 18445 Query 14462 GCACCACTG 14470 |||||| || Sbjct 18444 GCACCAATG 18436 >seq915 Length=13476 Score = 109 bits (120), Expect = 7e-19 Identities = 177/254 (70%), Gaps = 3/254 (1%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| |||||||||||||| |||||| || || ||||| || || Sbjct 284 GGCAAAGTCACAGTGAAGACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGTCAATCC 225 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||| | || |||||||| | ||| || || | || || ||| ||| ||||| Sbjct 224 GGGCATCAAGCCACGCTTCTTGAGCCAAAAGATGGAGCAGAAGCTACCACTGAAAAAGAT 165 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA 130194 ||||| ||| || || || | | |||||||||||| || ||| || || || Sbjct 164 ACCCTCTACAGCTGCAAAGGCGACCAAACGCTCAGCAAATGACTTGGAGTTGGT---AAT 108 Query 130195 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254 ||| |||| ||||||| ||||| |||| | ||| || | ||||| ||| || | ||| Sbjct 107 CCATCTCATAGCCCACTCAGCCTTCTTCTTTACACATGGAATGGTCTCGATGGCATTAAA 48 Query 130255 GAGTTCCTTCTTTT 130268 | | |||||||| Sbjct 47 TAAATTCTTCTTTT 34 >seq702 Length=79980 Score = 102 bits (112), Expect = 1e-16 Identities = 286/431 (66%), Gaps = 6/431 (1%) Strand=Plus/Minus Query 14000 CGGGCGTGGACACCCAAAATCTTCTCGCGACCGCGCACA-CTGGGTAGGGACACGGTGAT 14058 ||||| || || || ||||| ||||| ||| || | || | ||| ||| || Sbjct 62078 CGGGCATGAACCTTCAGGATCTTTTCGCGGCCGGTAACGTCCGGATTGGG-CACCACGAC 62020 Query 14059 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 14118 || ||| ||||| || || || || || | ||| || || | ||| ||||| || Sbjct 62019 CTGACGGTCAAAACGGCCCGGACGCAGCAAGGCCGGATCGAGAACATCGGGACGGTTGGT 61960 Query 14119 CGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTG 14178 ||| ||||| | | || ||| | | || || ||||||||||| || || || Sbjct 61959 CGCAGCGATCAGGATGACGCCTTCATTGGCCTCGAAACCATCCATCTCGACCAGCAGCTG 61900 Query 14179 ATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACC-ACCCGCACTGCGTTGCTTAC 14237 || | || ||||||||||| ||||| || | | | ||| || | ||| || | Sbjct 61899 GTTCAGCGTCTGTTCGCGTTCGTCATT-GCCGCCGCCCAGACCGGCGCCGCGATGACGGC 61841 Query 14238 CGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAA 14297 |||| || || ||||| |||||||| | ||| || ||| ||| | || ||| | Sbjct 61840 CGACCGCATCGATTTCGTCGATGAAGATGATGCAGGGTGCATTCTTCTTCGCCTGTTCGA 61781 Query 14298 AGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGG 14357 | || || ||||| | | ||||||||||| || ||||| || || || | || ||| Sbjct 61780 ACATGTCACGCACACGCGATGCACCGACACCGACGAACATTTCAACGAAGTCGGAACCGG 61721 Query 14358 AACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 14416 | || | || ||| || || || | |||||| |||||||| || || || || ||||| Sbjct 61720 -AGATGGTGAAGAACGGCACATTGGCTTCACCGGCGATGGCGCGCGCCAGAAGCGTCTTA 61662 Query 14417 CCCGTCCCTGG 14427 || || || || Sbjct 61661 CCGGTACCGGG 61651 >seq6801 Length=386 Score = 96.9 bits (106), Expect = 4e-15 Identities = 159/225 (71%), Gaps = 12/225 (5%) Strand=Plus/Plus Query 14050 CACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAAT 14109 |||| ||||| ||| || |||||||| ||||| || || ||| ||| ||||| || Sbjct 134 CACGCCGATCTGACGGTCGAAGCGACCGGGGCGCAGCAGCGCGGGGTCGAGGATGTCGGG 193 Query 14110 GCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTT---ATCAAAGCCATCCATCTC 14166 ||||| ||||||||||| |||||| | || |||| || ||||| |||||||| Sbjct 194 ACGGTTGGTCGCCGCGAT---CACGATGACGTTCGCGTTCGGGTCGAAGCCGTCCATCTC 250 Query 14167 AGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCAG-GCATACCACCCGC 14223 || | || |||| ||| || ||||| ||||| || ||| | ||| ||| || Sbjct 251 GACCAGCATCTGGTTGAGGGTCTGCTCGCGCTCATCGTTGCCGCCGCCCAT---ACCGGC 307 Query 14224 ACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 14268 | ||| || ||||||||||| || || |||||||| | ||| Sbjct 308 GCCGCGGTGACGGCCGACGGCGTCGATCTCGTCGATGAAGATGAT 352 >seq277 Length=43748 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 14237 CCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCA 14296 || || || ||||| |||||||| || ||||| ||||| ||||| ||||| | | Sbjct 1202 CCAACAGCATCAATCTCATCGATAAAGACGATGCATGGAGTGTTTTCGCGGGCCTCCTTG 1261 Query 14297 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 14356 |||| || ||||| | ||| ||||||||| ||||||||||| | ||| | || | Sbjct 1262 AAGAGGTCGCGCACACGGCTGGGACCGACACCGACAAACATCTCGATAAAGTCGGAACCA 1321 Query 14357 GAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 14415 | | || | || ||| |||||| | ||||| || |||| ||| | ||||||||| Sbjct 1322 G-AGATGGTGAAGAATGGGACGCCTGCCTCACCAGCTGTGGCCTTGGCAATGAGGGTCTT 1380 Query 14416 CCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGG-ATCCTGGCACCA 14467 || || || || || |||| | |||||| | |||| ||| |||||||| Sbjct 1381 ACCGGTGCCAGGGGGTCCAACGAGGATGGCACC-CTTGGGAATCTTGGCACCA 1432 >seq823 Length=40397 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/192 (71%), Gaps = 9/192 (5%) Strand=Plus/Minus Query 179658 GGTATAGAAAGACTTTGACTG---TGTACCCTTGGAAGCCTTGATGATTGGTGTCACCAT 179714 |||| |||| ||||| || || ||||||||| |||||||||| ||||| || | Sbjct 4015 GGTAAAGAATGACTTCTTCTCGGCTGCACCCTTGGAGACCTTGATGATGGGTGTAACAA- 3957 Query 179715 TGAGACCACAA---ACCCCAACTTGAGGAGCGATGGCCAGAAGTAGTGGATCATATTGAG 179771 | || ||| | | || | ||| |||||| |||| ||| || | |||| Sbjct 3956 --ACTCCTCAAGGAAGTCTCGCTCCAAAAGCTCTGGCCAAAAGTTGTGAATAAAGTTGAT 3899 Query 179772 GATGAGACCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACC 179831 | ||||||||| ||||| |||||||| ||||| ||||||||||||||| | | ||| Sbjct 3898 AAAGAGACCCTTGATGTGCGAACCATCATTATCTTGATCCGTCATAATCATCACCTTACC 3839 Query 179832 ATAGCGAAGCTC 179843 ||| | |||||| Sbjct 3838 ATATCTAAGCTC 3827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618331751251920