Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq32 268 1e-66 seq734 113 5e-20 seq894 93.3 5e-14 seq2491 91.5 2e-13 seq436 87.8 2e-12 >seq32 Length=13759 Score = 268 bits (296), Expect = 1e-66 Identities = 529/772 (69%), Gaps = 17/772 (2%) Strand=Plus/Minus Query 53189 CTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGAC 53247 || || ||||| || || | ||||||||||| |||||| | | || || | | || Sbjct 4524 CTCTTGATGCGTGTGTCCCTTGGTATCCACGGCGACGACATTGAGGC-TGCCATCGGCAC 4466 Query 53248 GTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGG 53307 ||| || | || || | ||||| || || ||||| || ||||||||||| ||||| Sbjct 4465 CTACCACCTCTTGTCACAGAGATACTTCACTCATGCCACTCCCACCCTGTTCAATGCTGG 4406 Query 53308 TACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGA 53367 || | || |||||||| ||||||||| || |||||||| ||||| ||||| Sbjct 4405 CACCCCCTATCCCCAGATGTCCTCCTGCTTCCTCGTCCAAATGAAGGACGACTCCATCGA 4346 Query 53368 CGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 || |||||||| || |||||| | ||||| | ||||||||||| | || || || || Sbjct 4345 GGGTATCTACGACACACTCAAGCAATGTGCTCTCATCTCCAAGTCTGCTGGAGGCATTGG 4286 Query 53428 TATC-CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCG 53486 || | ||| | || ||||||| | || | ||| || || |||||| | Sbjct 4285 CATTGCTGTGCAC-AAGATCCGTGCTGCCCGCTCCTACATCCGCGGCACCAACGGCACCT 4227 Query 53487 CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGG 53546 || | || | || || |||||||| || |||||| |||| ||||| || ||| |||| | Sbjct 4226 CCAACGGTCTAGTCCCCATGCTCCGTGTGTTCAACGACACTGCCCGCTATGTCGACCAAG 4167 Query 53547 GTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTA 53606 |||| || ||||||||||| | || || ||||||||||||| |||||||||||| | Sbjct 4166 GTGGCGGAAAGCGCAAGGGTGCATTTGCAGTCTACCTCGAGCCATGGCACGCCGACGTCT 4107 Query 53607 TGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTG 53665 | ||||| ||||| || || ||| || || | || |||||||| ||| |||||| || Sbjct 4106 TTGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGATGCG-TGCTCGTGACTTG 4048 Query 53666 TTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGG 53725 || || || |||||||| || ||||||||| | || ||| | ||||||||| Sbjct 4047 TTCTATGCCCTCTGGATTCCAGATCTCTTCATGGAGCGTGTTGAGCGCAATGAGGAGTGG 3988 Query 53726 TACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTC---TACGGTGAGGAGTTT 53782 || | ||||| |||||| | || ||| | || | ||||| | ||||| Sbjct 3987 GCATTGTTCTGCCCCAACGAGGCCAAGGGTCTC---GCTGACAAGTACGGCCAAGAGTTC 3931 Query 53783 AACGAGATGTATCGGACGTACG----CAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGC 53838 ||||| |||| || ||||| || |||| | | | ||| ||||||||| Sbjct 3930 AACGACTTGTACTTGAAGTACGAGGCCACCCCAGGTCTTC-CCCGCAAGGTGGTCAAGGC 3872 Query 53839 GCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTG 53898 | || | ||| || ||| || || |||| | ||||| || || || ||||| | Sbjct 3871 TCAAGATCTTTGGTTCGCCATCATCGAGTCCCAGATCGAGACTGGTACTCCCTACATCTT 3812 Query 53899 CTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATC 53950 ||||||||| | ||| | ||| |||||| | ||| ||||| |||| Sbjct 3811 GTACAAGGATGCATGCAATGCCAAGTCCAACCAACAAAACCTCGGCACCATC 3760 Score = 145 bits (160), Expect = 8e-30 Identities = 307/456 (67%), Gaps = 3/456 (1%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 || || ||||||||| ||||| | || || ||||| || || || || | |||||| | Sbjct 3234 GGTCTCCGCAACTCCTTGCTCATTGCCCCCATGCCCACTGCCTCAACCTCGCAGATCCTC 3175 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 |||||||||||| |||||||| ||||| ||||||||||| || || | || Sbjct 3174 GGCAACAACGAGTGCTTCGAGCCATACACCTCCAACATCTACTCTCGTCGTGTGTTGGCT 3115 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGG 55657 || ||||| | | |||||||||| | | || || | | | |||| Sbjct 3114 GGAGAGTTCACCGTCGTCAACAAGCAGTTGCTTGCCGATCTCATGGCCCTTGGCTTGTGG 3055 Query 55658 AACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGA--GA 55715 | ||| |||| |||| | || | ||| | || ||| ||||||| | | Sbjct 3054 ACCCCAGAGATGAAGAACCACATCATCGCCAACCGTGGTTCCATCCAGAACGTACCAGGC 2995 Query 55716 TTCCTCTGCGTCTC-AAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTG 55774 ||| | | || |||||| | ||| ||| || |||||||| | || ||||| Sbjct 2994 ATCCCCGAGGACTTGAAGGAGTTGTACAAGACTGTCTGGGAGATCCGTCAACGTAGTCTC 2935 Query 55775 ATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTC 55834 ||||||||| ||| ||||||||||| | |||||| || || ||||| | ||| |||| Sbjct 2934 ATTGACATGGCTGCCGATCGTGGTGCCTTCATCGATCAATCACAGTCATTCAACGTCTTT 2875 Query 55835 ATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGA 55894 || | | || | |||||| | | ||| |||||||| |||| ||||||||||| Sbjct 2874 ATTGCCGAGCCCAACTTTGCCAAGCTCACCTCAATGCACTTCTACGCATGGAAGAAGGGT 2815 Query 55895 CTCAAGACGGGTATGTACTATCTGCGGACCCGCGCC 55930 || ||||| || ||||||||| || | || || ||| Sbjct 2814 CTTAAGACTGGCATGTACTATTTGAGAACTCGTGCC 2779 >seq734 Length=61306 Score = 113 bits (124), Expect = 5e-20 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 158958 GTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCA 159017 ||| ||||| ||||| ||||| |||||||||||||| | |||||| ||||| | ||| Sbjct 13033 GTGGGTCTCGCCAGTGGCAATAACAAAGTCCTCTGGCTTGTCCTGTTGCAGCATCAACCA 13092 Query 159018 CATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAG 159077 ||| ||||| ||||| ||| |||||||||||||| |||||||||| ||||| || || Sbjct 13093 CATAGCCTCTACGTAGTCCCTGGCGTGACCCCAGTCACGCTTGGCATTGATGTTACCTAG 13152 >seq894 Length=16084 Score = 93.3 bits (102), Expect = 5e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 117310 AATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACT 117369 ||||||||||| || |||||||||||||| || | || || ||| |||||| Sbjct 13056 AATGTAACGAGGAGATGAGGCATCCTTGCCACCCATGAGTCTAGTTCCAAATGATCCACT 13115 Query 117370 CGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT 117429 || | || || || | ||||||||| || ||| ||| |||||||| | | ||| || Sbjct 13116 TGGATATAATAGATTGATGTTGTTGGCACCAACATAGTCTTGAGCCATGGCAATAATGGT 13175 Query 117430 ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483 | | || ||| |||||||||||| || |||| |||||| | |||||| || Sbjct 13176 GCTTGCAAGACTCATCTCACCATGGTGGTAGGCCGACTGCTCAGACACGTAACC 13229 >seq2491 Length=10632 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 55486 CAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAA 55545 |||||||||||| ||||||||||||||||| || || || |||||||| |||||||||| Sbjct 6818 CAACTCCCTGCTGGTGGCGCCAATGCCAACGGCTTCCACTTCTCAGATCCTGGGCAACAA 6877 Query 55546 CGAGGCGTTCGAGCCGTACACGACCAACATCTA 55578 ||| || ||||| ||||| | ||||| || Sbjct 6878 TGAGTGTTTTGAGCCTTACACTTCAAACATTTA 6910 >seq436 Length=26271 Score = 87.8 bits (96), Expect = 2e-12 Identities = 82/102 (80%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 158974 GCAATCACAAAGTCCTCTGGACCGGGCT-GTTGGAGCATGAGCCACATGGCCTCGACGTA 159032 ||||| ||| |||||||||| | || || |||| ||||| | ||||||||||||||| || Sbjct 14643 GCAATGACATAGTCCTCTGGTC-GGTCTCGTTGCAGCATCAACCACATGGCCTCGACATA 14585 Query 159033 ATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCC 159074 || | || || |||||||| |||||||||| ||||| || Sbjct 14584 GTCACGGGCATGGCCCCAGTCACGCTTGGCATTGATGTTACC 14543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547124464443600