Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq3538 1050 0.0 seq3933 419 9e-113 seq4568 351 4e-92 seq2271 269 1e-67 seq10411 197 6e-46 seq2342 161 4e-35 seq3951 100 1e-16 seq2676 84.2 9e-12 >seq3538 Length=6141 Score = 1050 bits (1164), Expect = 0.0 Identities = 620/645 (96%), Gaps = 0/645 (0%) Strand=Plus/Plus Query 2456 TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATC 2515 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5497 TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATC 5556 Query 2516 GTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGCCT 2575 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 5557 GTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAAGAGTATGGCCCAGCCT 5616 Query 2576 TCCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTC 2635 | ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 5617 TTCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTGAGTGTGGCCAGTTCTACTTC 5676 Query 2636 TGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCT 2695 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5677 TGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCT 5736 Query 2696 CTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGC 2755 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 5737 CTCCGCCATCGCGTTGTCATACGAGTCGCCTGTACTTCCTGTTGATGCCAGTAATCCGGC 5796 Query 2756 TTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATG 2815 ||| || || |||| || |||||||| || ||||||||||| |||||||| |||||||| Sbjct 5797 TTCCTTAAGCCGCTGTGTGTAGGCCAGCGATACATACTGAGAACCTTTATCACTGTGATG 5856 Query 2816 GATGGTGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGT 2875 || ||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 5857 GACCGTGCCGGACGGTCGACGGGCCCATAACGCCTGCTCCAGTGCATCCAGCACGAATGT 5916 Query 2876 CGTTTCCATAGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 2935 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5917 CGTTTCCATGGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 5976 Query 2936 AAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 2995 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5977 GAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 6036 Query 2996 CTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTTT 3055 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6037 CTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTTT 6096 Query 3056 CCGGCTGATGGTCGTACGGACCTTTTTACCCCGGAGAACACCGGC 3100 |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 6097 CCGGCTGATGGTCGTACGGACCTTTTTACCCCAGAGAACACCGGC 6141 >seq3933 Length=4962 Score = 419 bits (464), Expect = 9e-113 Identities = 300/345 (87%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 14107 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 14166 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 4930 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 4871 Query 14167 CTCCGGCACCATCTCATCAAAACTCGTCATGTACTTCTCATCCCGTTCGACCACGACATA 14226 ||||||||||||||| |||||||||| |||||| || |||||||| || ||||||||||| Sbjct 4870 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGACATA 4811 Query 14227 ATGCAGGCCTTCACGCTTCATGCGTGGATCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 14286 ||||||||||||||||||||| ||||| || |||||||| ||||||||||| || || Sbjct 4810 ATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 4751 Query 14287 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 14346 || |||||||||||| | |||||||||||||||||||| | ||| || || || || || Sbjct 4750 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGAAACC 4691 Query 14347 GCCAAGCCGGAACTTCATGAAGTCGCGGGAAGTGAAGGGGCATTTAAGCTCAAGGCCGTT 14406 || |||||||| |||||||| || ||||| || || |||||||| || ||||||||||| Sbjct 4690 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCCGTT 4631 Query 14407 ACCGTCGCTGCATAAACCGTCGGGAGAGCAGGCGGTGCGCATGCT 14451 ||||| ||||||||||| ||||||||||||||||||||||| || Sbjct 4630 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACT 4586 Score = 226 bits (250), Expect = 1e-54 Identities = 204/254 (80%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 14530 GTATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACAAAC 14589 ||| || |||||||| || |||| |||||| ||||||||||| ||||| || || ||||| Sbjct 4536 GTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGGTGCAAAC 4477 Query 14590 TTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGAACG 14649 ||||||||||||||||||||||| |||||||| | |||||||| || | || || || Sbjct 4476 CTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGAGCG 4417 Query 14650 TGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTTGTG 14709 |||||||||||||| ||||||||||||||||| ||||| || ||||| | | ||||| Sbjct 4416 GGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTTGTG 4357 Query 14710 CCATCCATCATCGCCCTGGTCGA-GGCTGGTAATATCCACGCCAGTTCGCTGGAGAATAA 14768 |||| ||||||| ||||| |||| ||| | | || | || || ||||| || |||| Sbjct 4356 CCATGCATCATCCCCCTGTTCGACAGCT-CTCACGTCGATCCCGGTACGCTGCAGGATAA 4298 Query 14769 TTTCTGGTGTCATG 14782 | || ||||||||| Sbjct 4297 TGTCCGGTGTCATG 4284 >seq4568 Length=223 Score = 351 bits (388), Expect = 4e-92 Identities = 211/222 (95%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 3144 ACCCTGATTCCTTCCCGTAACAACTGACGCCAGACTTTACGCACACCGTACACCTGATGA 3203 || ||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 1 ACTCTGATACCTTCCCGTAACAACTGACGCCAGACTTTACGCACACCGTATACCTTGTGA 60 Query 3204 TTTTCATCGTATACGCGCTGTATCTCTCTCTTCAGCCAGTCGTCGTGCTGCGCACGGGCA 3263 ||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||| Sbjct 61 TTTTCATCGTATACGCGCTGTATCTCTTTCTTCAGCCAGTTATCGCGCTGCGCACGGGCA 120 Query 3264 CTGCGTTTATCCGGATGATGTCGCTGTTGCTGACAATGGTAATACGTTGACGGGGCAATA 3323 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 121 CTGCGTTTATCCGGATGATGTCGCTGTTGCTGACAGTGGTAATACGTTGACGGGGCAATA 180 Query 3324 TGCAGTTCGCTGCATACCGGTCCGACCCCGTACTGCTCACGC 3365 |||||||||||||||| ||||||||||||||||||||||||| Sbjct 181 TGCAGTTCGCTGCATAGCGGTCCGACCCCGTACTGCTCACGC 222 >seq2271 Length=37941 Score = 269 bits (298), Expect = 1e-67 Identities = 279/365 (76%), Gaps = 3/365 (1%) Strand=Plus/Plus Query 3785 GCGTTAATGCGTTCAGGCAGATTTCCTTTCACTGCAAAAAGGCAGTCTTCGCTGTTAGCG 3844 |||| ||||| | ||||| || || ||| ||||| || |||||||||||||| || Sbjct 9800 GCGTCCATGCGCGCCGGCAGTTTCCCGCGCACCGCAAACAGACAGTCTTCGCTGTTCGCC 9859 Query 3845 CGAGTGGTGCTACCCATACCCATGACCAGCTTGTCGGTCTGTCTTTTCCCGCATTTGTTC 3904 || || || ||||| || ||| | ||| | | || | ||| ||||| | Sbjct 9860 CGGGTCATGTGTCCCATGCCGATGGCGCTGTTGCCTTTGTGCTTATTCGT---TTTGTGC 9916 Query 3905 CAGGTTAATCCTTTCATCGTCACCAGACGAAAGCCCCACGCTTCTACAACCTTCAATGCT 3964 ||||| ||||| |||||||||| ||| ||||| ||||||||||| | ||||||||| ||| Sbjct 9917 CAGGTGAATCCCTTCATCGTCATCAGGCGAAATCCCCACGCTTCGATAACCTTCAACGCT 9976 Query 3965 TCAAGTGGTTGTGTAGGCACCCACCACATAGCCAACAGGCAATTATCGGCTGCCAGTTCC 4024 |||| || ||||| || |||||||||||||||| |||||||| ||||| ||||| ||| Sbjct 9977 TCAATCGGCTGTGTTGGAACCCACCACATAGCCAGCAGGCAATCTTCGGCAGCCAGATCC 10036 Query 4025 CATACCGGGAGGCGGCAGATATCCAGAAGACTCATGACCGGATATTTAAAACTTGCACCG 4084 || || || ||||||||||| ||||| | |||| |||||||| || || | || ||| Sbjct 10037 CACACAGGCAGGCGGCAGATGTCCAGCACGTTCATAACCGGATACTTGAAGCCGGCGCCG 10096 Query 4085 CGTTGACCATCGGTTGCTTTGTCTCGGAATGTCCAGGGGGGATCTGCGTAAATGAGAGTG 4144 || | || |||| ||||||||| ||| || ||| || || |||||||||||||||||| Sbjct 10097 CGCTCGCCGTCGGCTGCTTTGTCACGGTATACCCAAGGCGGGTCTGCGTAAATGAGAGTG 10156 Query 4145 TATTT 4149 ||||| Sbjct 10157 TATTT 10161 Score = 105 bits (116), Expect = 3e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 2314 CGCATTGGTTACCCCAGACATCAAATCCATGCGAGGTGTGACGGGCGAACAGTTCTATCC 2373 |||| ||||| ||||| || ||||| |||||||| | || |||||||| || || || | Sbjct 9642 CGCACTGGTTTCCCCAAACGTCAAACCCATGCGACGACTGGCGGGCGAATAGCTCGATGC 9701 Query 2374 GGGGAACATCGCCAAGAAGTTGCACAAGTTTTTCTCGCGCCATATCCGGCTTGCGGGAGT 2433 | || ||||||||||| | ||||| || || |||| || ||||||||||| |||| Sbjct 9702 GCGGCACATCGCCAAGCAACTGCACCAGCTTCTCTCTGATCACGTCCGGCTTGCGCGAGT 9761 Query 2434 GATCAAGGCGCGGTGCAGTGA 2454 || |||||||| || |||| Sbjct 9762 TCTCCAGGCGCGGCGCCGTGA 9782 >seq10411 Length=590 Score = 197 bits (218), Expect = 6e-46 Identities = 166/202 (82%), Gaps = 5/202 (2%) Strand=Plus/Plus Query 34200 CTGCCCAATTCCAGAAACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGT 34259 ||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2 CTGTCCAATTCCCGAAACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGTTACTGCTGT 61 Query 34260 CTGTTTGTTTTGAACAGTAAACGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGC 34319 | |||||||| |||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 62 CGGTTTGTTTCCAACAGTAAACGTCTGTTGAGCACATCCTGTAATAAGCATTGCCAGAGC 121 Query 34320 AGTAGCGAGTAGCAtttttttCATGGTGTTATTCCCGATGC-TTTTTGAAGTTCGCAGAA 34378 | || | | |||||||||||| | |||| | ||| || || || |||||| Sbjct 122 GGCAGAAAACAACATTTTTTTCATCTTATTATCC----TGCATTGTTAAAAACGGCAGAA 177 Query 34379 TCGTATGTGTAGAAAATTAAAC 34400 || |||||| | |||||||| Sbjct 178 TCCTATGTGACAACAATTAAAC 199 Score = 138 bits (152), Expect = 5e-28 Identities = 145/183 (79%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 34456 AGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAA 34515 || |||| || |||||| ||||||||| |||||| ||| || ||||| ||||||||| Sbjct 328 AGCTGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCC-GACGGGGAA 386 Query 34516 CTTCT-CTGCGGGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTT 34574 | || ||||| ||||||||||| ||||||||||||||||||||||||||||| | | Sbjct 387 TTCCTTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTG 445 Query 34575 TTCACGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAAC 34634 | || ||| | || | || ||| | || ||| | ||||||||| ||||||||||||| Sbjct 446 CTGAC-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAAC 502 Query 34635 CGG 34637 ||| Sbjct 503 CGG 505 >seq2342 Length=4104 Score = 161 bits (178), Expect = 4e-35 Identities = 106/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 14107 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 14166 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 3988 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 4047 Query 14167 CTCCGGCACCATCTCATCAAAACTCGTCATGTACTTCTCATCCCGTTCGACCACGAC 14223 ||||||||||||||| |||||||||| |||||| || |||||||| || |||||||| Sbjct 4048 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGAC 4104 >seq3951 Length=514 Score = 100 bits (110), Expect = 1e-16 Identities = 84/102 (82%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 33617 GGGCTG--AATCATTACCGCGATAACGCCATAACCTACAAAGAGCAGCGCGATAAAAAAG 33674 |||||| ||||||||||| ||||||||||| |||||||||| |||||||| ||||| | Sbjct 413 GGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATG 472 Query 33675 TCAGTGAGCTGGAGCTGGCAAATGCAACCATTACTGATATGC 33716 ||| || ||| ||||||| || || | |||||||| |||| Sbjct 473 CCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGC 514 >seq2676 Length=3318 Score = 84.2 bits (92), Expect = 9e-12 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 3715 GTTTACCTCTTTCTCAGGGAGTTTAGTCTCCAGGATTTCCGGGGCGGTTCA 3765 |||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 1 GTTTACCTCTTTCTCAGGAAGTTTAGTCTCCAGGATTCCCGGGGCGGTTCA 51 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203262843820060