Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq444 123 2e-23 seq1158 116 2e-21 seq60 116 2e-21 >seq444 Length=38654 Score = 123 bits (136), Expect = 2e-23 Identities = 166/227 (73%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || |||||| ||||||||| ||||| ||||| || || || || Sbjct 5034 AGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGA 4975 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || |||||||| || |||||||| || | ||| |||||||| || || | ||||||| Sbjct 4974 CCATCCTCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGAATTCCCTCC 4915 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || || || ||| | || || || | ||| || |||| ||| Sbjct 4914 TTGTCTTGGATC-TTGGTCTTGACGTTCTCGATAGTATCGGAACCCTCGACCTCCAAGGT 4856 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA-TGTTGATT 34713 || || || || || | ||||| ||||| || |||| ||||| || Sbjct 4855 AATAGTCTTGCCTGTCAGAGTTTTAACAAAGATTTGCATTGTTGTTT 4809 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || |||||| ||||||||| ||||| || || ||| Sbjct 5727 CCTCCACGAAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAA 5668 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || |||||||| ||||| ||||| || | ||| |||||||| || || Sbjct 5667 AGGGTACGACCATCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCAGGTGGG 5608 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| || || || || | ||| ||||| | ||| || Sbjct 5607 ATACCCTCCTTGTCT-TGAATCTTGGTCTTGACATTCTCAATGGTGTCAGAACCCTCGAC 5549 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || ||||| || || || || || || || ||||| Sbjct 5548 CTCGAGAGTGATGGTCTTACCAGTCAAGGTCTTGACGAAGATTTGCAT 5501 Score = 102 bits (112), Expect = 5e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | |||||| ||| ||||||||| ||||| ||||| || || || || Sbjct 5490 AGACGAAGAACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGA 5431 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || |||||||| || |||||||| || | ||| |||||||| || || | |||||| Sbjct 5430 CCATCCTCAAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGGTCAGGTGGGATACCCTCC 5371 Query 34609 TTGTCTGTGATCTT 34622 |||||| |||||| Sbjct 5370 TTGTCTTGGATCTT 5357 >seq1158 Length=25781 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | |||||||||| ||||||||| ||||| || || ||| Sbjct 9025 CCACCACGAAGACGGAGGACGAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 9084 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| |||||||| ||||| ||||| || | ||| ||||| || || || Sbjct 9085 AGGGTACGACCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGATCGGGTGGG 9144 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| || || || ||| | || || || | ||| || Sbjct 9145 ATACCCTCCTTGTCT-TGAATCTTGGTCTTGACGTTCTCGATGGTATCAGAACCCTCAAC 9203 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || ||||| || || || || ||||| || ||||| Sbjct 9204 CTCAAGGGTGATGGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 9251 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || || || ||||||||||||||| ||||| || || || || Sbjct 9262 AGACGGAGCACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAATCGGAGAGAGTGCGA 9321 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || ||||| || ||||| || || | ||| ||||| || || || | |||||| Sbjct 9322 CCATCCTCGAGTTGCTTGCCGGCGAAGATGAGACGTTGTTGATCGGGTGGGATACCCTCC 9381 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| || || || ||| | || || || | ||| || |||| ||| Sbjct 9382 TTATCT-TGAATCTTGGTCTTGACGTTCTCGATGGTATCGGAACCCTCGACCTCCAAGGT 9440 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || ||||| || | || || || ||||||||||| Sbjct 9441 AATTGTCTTACCAGTGAGGGTCTTGACGAAAATCTGCAT 9479 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | |||||| ||| |||||||||||| || || || || || || || Sbjct 9490 AGACGAAGGACGAGATGGAGGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGAGTACGA 9549 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || ||||| || || || ||||| |||||||| || || | |||||| Sbjct 9550 CCATCCTCGAGCTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGTGGAATACCCTCC 9609 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || || || ||| | || ||||| | ||| || || | || Sbjct 9610 TTGTCT-TGAATCTTGGTCTTGACGTTCTCGATGGTGTCAGAACCCTCAACCTCGAGAGT 9668 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || |||||||| | || || |||||||| ||||| Sbjct 9669 GATGGTCTTACCGGTGAGGGTCTTAACAAAAATTTGCAT 9707 >seq60 Length=27343 Score = 116 bits (128), Expect = 2e-21 Identities = 169/235 (72%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| ||||| || ||||||||| ||||| || || ||| Sbjct 11515 CCACCACGAAGACGGAGAACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCCGAA 11574 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || |||||||| |||||||| || || | ||| |||||||| || || Sbjct 11575 AGGGTGCGACCATCCTCAAGTTGCTTACCGGCGAAGATAAGACGTTGTTGGTCGGGGGGG 11634 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | || ||| | || ||||| || ||| || Sbjct 11635 ATACCCTCCTTGTCTTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCAGAGCCCTCGAC 11693 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT-GTTGAT 34712 || | || || || || || || || || || || || |||||||| |||||| Sbjct 11694 CTCGAGTGTGATGGTCTTTCCTGTCAATGTCTTAACGAAGATCTGCATGGTTGAT 11748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314678269766006