Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq444 136 3e-27 seq1158 131 1e-25 seq60 120 3e-22 seq974 96.9 3e-15 >seq444 Length=38654 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||||||||| |||||| ||||||| | || || || ||| Sbjct 4817 ATGCAAATCTTTGTTAAAACTCTGACAGGCAAGACTATTACCTTGGAGGTCGAGGGTTCC 4876 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| ||||| || || |||||||| || || || ||||| || ||| Sbjct 4877 GATACTATCGAGAACGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCACCTGACCAA 4936 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||||| ||| | || || || || | |||||||||||| Sbjct 4937 CAACGTCTCATCTTTGCCGGCAAGCAACTTGAGGATGGTCGTACTCTCTCCGATTACAAC 4996 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | || |||||| | ||| | || ||||| || Sbjct 4997 ATCCAAAAGGAGTCCACTCTTCACTTGGTTCTCCGTCTCCGTGGTGGTAT 5046 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || || ||| | || || ||||| || ||| ||| Sbjct 5273 ATGCAAATCTTCGTCAAGACCCTCACTGGTAAGACCATCACCCTTGAGGTCGAAGGTTCC 5332 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| ||||| || || |||||||| || || || ||||| || ||| Sbjct 5333 GATACTATCGAGAACGTCAAGACCAAGATCCAAGACAAGGAGGGTATCCCACCTGACCAA 5392 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||||| ||| | || || || || | |||||||||||| Sbjct 5393 CAACGTCTCATCTTTGCCGGCAAGCAACTTGAGGATGGTCGTACTCTCTCCGATTACAAC 5452 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | ||| | ||| | ||| | || ||||| || Sbjct 5453 ATCCAAAAGGAGTCCACCCTCCATCTCGTTCTTCGTCTCCGTGGTGGTAT 5502 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| || ||| | || ||||| || || || || Sbjct 5501 ATGCAAATCTTCGTCAAGACCTTGACTGGTAAGACCATCACTCTCGAGGTCGAGGGTTCT 5560 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || ||||||||||| || || || ||||| || ||| Sbjct 5561 GACACCATTGAGAATGTCAAGACCAAGATTCAAGACAAGGAGGGTATCCCACCTGACCAA 5620 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || || ||| | || || || ||| |||| || |||||| Sbjct 5621 CAACGTCTCATCTTTGCTGGTAAGCAACTTGAGGATGGTCGTACCCTTTCTGACTACAAC 5680 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||||||||| || | || |||||| | ||| | || || || Sbjct 5681 ATCCAAAAGGAGTCCACTCTTCACTTGGTTCTCCGTCTTCGTGGAGG 5727 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || || ||| | || |||||||| || || || Sbjct 5045 ATGCAAATCTTCGTTAAGACCCTCACTGGTAAGACCATCACTCTTGAGGTCGAGGGTTCT 5104 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || || |||||||| ||||| || ||||| || ||| Sbjct 5105 GACACCATTGAGAATGTCAAGACCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAA 5164 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || || || | || || || || |||| || |||||| Sbjct 5165 CAACGTCTCATCTTCGCTGGTAAGCAGCTCGAGGATGGTCGTACTCTTTCTGACTACAAC 5224 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | ||| | || | ||| | || ||||| || Sbjct 5225 ATCCAAAAGGAGTCCACTCTCCATCTCGTCCTCCGTCTCCGTGGTGGTAT 5274 >seq1158 Length=25781 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | ||||| | || || || ||| Sbjct 9479 ATGCAGATTTTCGTCAAGACCCTCACTGGTAAGACAATTACCTTGGAGGTCGAGGGTTCC 9420 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| ||||| || |||||||| || || || || |||||||||||| Sbjct 9419 GATACCATCGAGAACGTCAAGACCAAGATTCAAGATAAGGAGGGTATCCCACCCGATCAA 9360 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||||||||| ||| | || || || || | |||||||||||| Sbjct 9359 CAACGTCTCATCTTCGCCGGCAAGCAACTCGAGGATGGTCGCACTCTCTCCGATTACAAC 9300 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| ||| | || ||||| | ||| | || ||||| || Sbjct 9299 ATTCAAAAGGAGTCAACCCTTCACTTGGTGCTCCGTCTCCGTGGTGGTAT 9250 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||| || ||| | || || ||||| || || || Sbjct 9251 ATGCAAATCTTTGTCAAGACCTTGACTGGTAAGACCATCACCCTTGAGGTTGAGGGTTCT 9192 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| ||||| || ||||||||||| || || || |||||||||||| Sbjct 9191 GATACCATCGAGAACGTCAAGACCAAGATTCAAGACAAGGAGGGTATCCCACCCGATCAA 9132 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || || ||| | || ||| || ||| ||||||| |||||| Sbjct 9131 CAACGTCTCATCTTTGCTGGTAAGCAACTTGAGGACGGTCGTACCCTTTCCGACTACAAC 9072 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||||||||| || | ||| | || | ||| | || ||||| Sbjct 9071 ATCCAAAAGGAGTCCACTCTCCATCTCGTCCTCCGTCTTCGTGGTGG 9025 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || |||||||| || ||||| |||||| | || || | || || || || Sbjct 9936 CATGCAAATCTTTGTAAAGACACTGACTGGCAAGACCATCACCTTGGAGGTTGAGGGTTC 9877 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| ||||| || || ||||| || || || || ||||| || || Sbjct 9876 CGATACCATCGAGAACGTCAAGACCAAGATCCAAGATAAGGAGGGTATCCCACCTGACCA 9817 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||| | || | || || || ||| | || || || ||| ||||||| ||||| Sbjct 9816 ACAACGTCTCATCTTTGCTGGTAAGCAACTTGAGGATGGTCGCACCCTTTCCGACTACAA 9757 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||||||||| || | || |||||| | ||| | || ||||| || Sbjct 9756 CATCCAAAAGGAGTCCACTCTCCACTTGGTTCTCCGTCTCCGTGGTGGTAT 9706 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || ||||| ||| | || ||||| || || || || Sbjct 9707 ATGCAAATTTTTGTTAAGACCCTCACCGGTAAGACCATCACTCTCGAGGTTGAGGGTTCT 9648 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || ||||||||||| || || || ||||| || ||| Sbjct 9647 GACACCATCGAGAACGTCAAGACCAAGATTCAAGACAAGGAGGGTATTCCACCTGACCAA 9588 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || || || | || || || || | ||||| ||||| Sbjct 9587 CAACGTTTGATCTTCGCTGGTAAGCAGCTCGAGGATGGTCGTACTCTCTCCGACTACAAT 9528 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| ||| | ||| | || | ||| | || || || || Sbjct 9527 ATTCAAAAGGAGTCCACCCTCCATCTCGTCCTTCGTCTCCGTGGAGGTAT 9478 >seq60 Length=27343 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || || || |||| || ||| | || || || || || || | Sbjct 11743 CCATGCAGATCTTCGTTAAGACATTGACAGGAAAGACCATCACACTCGAGGTCGAGGGCT 11684 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| | || |||| ||||| || || |||||||| || || || || ||||| | Sbjct 11683 CTGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCCGACC 11624 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 |||| ||| | || | |||||| || ||| | || || || ||| |||| || |||| Sbjct 11623 AACAACGTCTTATCTTCGCCGGTAAGCAACTTGAGGATGGTCGCACCCTTTCGGACTACA 11564 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||| ||||||||||| ||| | || |||||| | ||| | || ||||| Sbjct 11563 ACATCCAAAAGGAGTCAACCCTCCACTTGGTTCTCCGTCTTCGTGGTGG 11515 >seq974 Length=18895 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 || || ||| | ||||| ||||| || || || ||| | || |||| ||||| Sbjct 5039 ACAGGTAAGACCATTACCCTTGAGGTCGAGGGCTCAGACACCATCGAGAATGTCAAGGCC 4980 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || |||||||| || || || || ||||||||||| ||||| || | ||| || || Sbjct 4979 AAGATCCAAGACAAGGAGGGAATCCCCCCCGATCAACAACGTTTGATCTTCGCTGGTAAG 4920 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGAC 27184 || ||||| ||| || ||| | || || |||||||| || |||||||| || Sbjct 4919 CAGTTGGAGGACGGTCGTACCCTCTCTGACTACAACATCCAGAAGGAGTCAAC 4867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434845649024640