Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq3538 1050 0.0 seq3933 419 1e-112 seq2271 360 8e-95 seq4568 351 4e-92 seq10411 197 6e-46 seq2342 161 4e-35 seq3951 100 1e-16 seq2676 84.2 9e-12 >seq3538 Length=6141 Score = 1050 bits (1164), Expect = 0.0 Identities = 620/645 (96%), Gaps = 0/645 (0%) Strand=Plus/Plus Query 32904 TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATC 32963 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5497 TGAACCGCCCCGGGTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATC 5556 Query 32964 GTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGCCT 33023 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 5557 GTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAAGAGTATGGCCCAGCCT 5616 Query 33024 TCCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTC 33083 | ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 5617 TTCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTGAGTGTGGCCAGTTCTACTTC 5676 Query 33084 TGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCT 33143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5677 TGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCT 5736 Query 33144 CTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGC 33203 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 5737 CTCCGCCATCGCGTTGTCATACGAGTCGCCTGTACTTCCTGTTGATGCCAGTAATCCGGC 5796 Query 33204 TTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATG 33263 ||| || || |||| || |||||||| || ||||||||||| |||||||| |||||||| Sbjct 5797 TTCCTTAAGCCGCTGTGTGTAGGCCAGCGATACATACTGAGAACCTTTATCACTGTGATG 5856 Query 33264 GATGGTGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGT 33323 || ||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 5857 GACCGTGCCGGACGGTCGACGGGCCCATAACGCCTGCTCCAGTGCATCCAGCACGAATGT 5916 Query 33324 CGTTTCCATAGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 33383 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5917 CGTTTCCATGGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 5976 Query 33384 AAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 33443 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5977 GAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 6036 Query 33444 CTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTTT 33503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6037 CTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTTT 6096 Query 33504 CCGGCTGATGGTCGTACGGACCTTTTTACCCCGGAGAACACCGGC 33548 |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 6097 CCGGCTGATGGTCGTACGGACCTTTTTACCCCAGAGAACACCGGC 6141 >seq3933 Length=4962 Score = 419 bits (464), Expect = 1e-112 Identities = 300/345 (87%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 14164 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 14223 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 4930 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 4871 Query 14224 CTCCGGCACCATCTCATCAAAACTCGTCATGTACTTCTCATCCCGTTCGACCACGACATA 14283 ||||||||||||||| |||||||||| |||||| || |||||||| || ||||||||||| Sbjct 4870 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGACATA 4811 Query 14284 ATGCAGGCCTTCACGCTTCATGCGTGGATCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 14343 ||||||||||||||||||||| ||||| || |||||||| ||||||||||| || || Sbjct 4810 ATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 4751 Query 14344 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 14403 || |||||||||||| | |||||||||||||||||||| | ||| || || || || || Sbjct 4750 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGAAACC 4691 Query 14404 GCCAAGCCGGAACTTCATGAAGTCGCGGGAAGTGAAGGGGCATTTAAGCTCAAGGCCGTT 14463 || |||||||| |||||||| || ||||| || || |||||||| || ||||||||||| Sbjct 4690 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCCGTT 4631 Query 14464 ACCGTCGCTGCATAAACCGTCGGGAGAGCAGGCGGTGCGCATGCT 14508 ||||| ||||||||||| ||||||||||||||||||||||| || Sbjct 4630 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACT 4586 Score = 226 bits (250), Expect = 1e-54 Identities = 204/254 (80%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 14587 GTATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACAAAC 14646 ||| || |||||||| || |||| |||||| ||||||||||| ||||| || || ||||| Sbjct 4536 GTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGGTGCAAAC 4477 Query 14647 TTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGAACG 14706 ||||||||||||||||||||||| |||||||| | |||||||| || | || || || Sbjct 4476 CTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGAGCG 4417 Query 14707 TGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTTGTG 14766 |||||||||||||| ||||||||||||||||| ||||| || ||||| | | ||||| Sbjct 4416 GGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTTGTG 4357 Query 14767 CCATCCATCATCGCCCTGGTCGA-GGCTGGTAATATCCACGCCAGTTCGCTGGAGAATAA 14825 |||| ||||||| ||||| |||| ||| | | || | || || ||||| || |||| Sbjct 4356 CCATGCATCATCCCCCTGTTCGACAGCT-CTCACGTCGATCCCGGTACGCTGCAGGATAA 4298 Query 14826 TTTCTGGTGTCATG 14839 | || ||||||||| Sbjct 4297 TGTCCGGTGTCATG 4284 >seq2271 Length=37941 Score = 360 bits (398), Expect = 8e-95 Identities = 396/524 (76%), Gaps = 5/524 (1%) Strand=Plus/Plus Query 3684 CGCATTGGTTACCCCAGACATCAAATCCATGCGAGGTGTGACGGGCGAACAGTTCTATCC 3743 |||| ||||| ||||| || ||||| |||||||| | || |||||||| || || || | Sbjct 9642 CGCACTGGTTTCCCCAAACGTCAAACCCATGCGACGACTGGCGGGCGAATAGCTCGATGC 9701 Query 3744 GGGGAACATCGCCAAGAAGTTGCACAAGTTTTTCTCGCGCCATATCCGGCTTGCGGGAGT 3803 | || ||||||||||| | ||||| || || |||| || ||||||||||| |||| Sbjct 9702 GCGGCACATCGCCAAGCAACTGCACCAGCTTCTCTCTGATCACGTCCGGCTTGCGCGAGT 9761 Query 3804 GATCAAGGCGCGGTGCAGTGA-ATGACTGGATTATTCCGGCGTTAATGCGTTCAGGCAGA 3862 || |||||||| || |||| ||| |||| || |||| ||||| | ||||| Sbjct 9762 TCTCCAGGCGCGGCGCCGTGACATG-CTGGCAGATCGAAGCGTCCATGCGCGCCGGCAGT 9820 Query 3863 TTTCCTTTCACTGCAAAAAGGCAGTCTTCGCTGTTAGCGCGAGTGGTGCTACCCATACCC 3922 || || ||| ||||| || |||||||||||||| || || || || ||||| || Sbjct 9821 TTCCCGCGCACCGCAAACAGACAGTCTTCGCTGTTCGCCCGGGTCATGTGTCCCATGCCG 9880 Query 3923 ATGACCAGCTTGTCGGTCTGTCTTTTCCCGCATTTGTTCCAGGTTAATCCTTTCATCGTC 3982 ||| | ||| | | || | ||| ||||| |||||| ||||| ||||||||| Sbjct 9881 ATGGCGCTGTTGCCTTTGTGCTTATTCGT---TTTGTGCCAGGTGAATCCCTTCATCGTC 9937 Query 3983 ACCAGACGAAAGCCCCACGCTTCTACAACCTTCAATGCTTCAAGTGGTTGTGTAGGCACC 4042 | ||| ||||| ||||||||||| | ||||||||| ||||||| || ||||| || ||| Sbjct 9938 ATCAGGCGAAATCCCCACGCTTCGATAACCTTCAACGCTTCAATCGGCTGTGTTGGAACC 9997 Query 4043 CACCACATAGCCAACAGGCAATTATCGGCTGCCAGTTCCCATACCGGGAGGCGGCAGATA 4102 ||||||||||||| |||||||| ||||| ||||| ||||| || || ||||||||||| Sbjct 9998 CACCACATAGCCAGCAGGCAATCTTCGGCAGCCAGATCCCACACAGGCAGGCGGCAGATG 10057 Query 4103 TCCAGAAGACTCATGACCGGATATTTAAAACTTGCACCGCGTTGACCATCGGTTGCTTTG 4162 ||||| | |||| |||||||| || || | || ||||| | || |||| ||||||| Sbjct 10058 TCCAGCACGTTCATAACCGGATACTTGAAGCCGGCGCCGCGCTCGCCGTCGGCTGCTTTG 10117 Query 4163 TCTCGGAATGTCCAGGGGGGATCTGCGTAAATGAGAGTGTATTT 4206 || ||| || ||| || || ||||||||||||||||||||||| Sbjct 10118 TCACGGTATACCCAAGGCGGGTCTGCGTAAATGAGAGTGTATTT 10161 >seq4568 Length=223 Score = 351 bits (388), Expect = 4e-92 Identities = 211/222 (95%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 33592 ACCCTGATTCCTTCCCGTAACAACTGACGCCAGACTTTACGCACACCGTACACCTGATGA 33651 || ||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 1 ACTCTGATACCTTCCCGTAACAACTGACGCCAGACTTTACGCACACCGTATACCTTGTGA 60 Query 33652 TTTTCATCGTATACGCGCTGTATCTCTCTCTTCAGCCAGTCGTCGTGCTGCGCACGGGCA 33711 ||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||| Sbjct 61 TTTTCATCGTATACGCGCTGTATCTCTTTCTTCAGCCAGTTATCGCGCTGCGCACGGGCA 120 Query 33712 CTGCGTTTATCCGGATGATGTCGCTGTTGCTGACAATGGTAATACGTTGACGGGGCAATA 33771 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 121 CTGCGTTTATCCGGATGATGTCGCTGTTGCTGACAGTGGTAATACGTTGACGGGGCAATA 180 Query 33772 TGCAGTTCGCTGCATACCGGTCCGACCCCGTACTGCTCACGC 33813 |||||||||||||||| ||||||||||||||||||||||||| Sbjct 181 TGCAGTTCGCTGCATAGCGGTCCGACCCCGTACTGCTCACGC 222 >seq10411 Length=590 Score = 197 bits (218), Expect = 6e-46 Identities = 166/202 (82%), Gaps = 5/202 (2%) Strand=Plus/Plus Query 35579 CTGCCCAATTCCAGAAACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGCTACTGCTGT 35638 ||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2 CTGTCCAATTCCCGAAACGAAGAAATGATGGGTGATGGTTTCCTTTGGTGTTACTGCTGT 61 Query 35639 CTGTTTGTTTTGAACAGTAAACGTCTGTTGAGCACATCCTGTAATAAGCAGGGCCAGCGC 35698 | |||||||| |||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 62 CGGTTTGTTTCCAACAGTAAACGTCTGTTGAGCACATCCTGTAATAAGCATTGCCAGAGC 121 Query 35699 AGTAGCGAGTAGCAtttttttCATGGTGTTATTCCCGATGC-TTTTTGAAGTTCGCAGAA 35757 | || | | |||||||||||| | |||| | ||| || || || |||||| Sbjct 122 GGCAGAAAACAACATTTTTTTCATCTTATTATCC----TGCATTGTTAAAAACGGCAGAA 177 Query 35758 TCGTATGTGTAGAAAATTAAAC 35779 || |||||| | |||||||| Sbjct 178 TCCTATGTGACAACAATTAAAC 199 Score = 138 bits (152), Expect = 5e-28 Identities = 145/183 (79%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 35835 AGGTGCGATGAATCGTCATTGTATTCCCGGATTAACTATGTCCACAGCCCTGACGGGGAA 35894 || |||| || |||||| ||||||||| |||||| ||| || ||||| ||||||||| Sbjct 328 AGCTGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCC-GACGGGGAA 386 Query 35895 CTTCT-CTGCGGGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTT 35953 | || ||||| ||||||||||| ||||||||||||||||||||||||||||| | | Sbjct 387 TTCCTTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTG 445 Query 35954 TTCACGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAAC 36013 | || ||| | || | || ||| | || ||| | ||||||||| ||||||||||||| Sbjct 446 CTGAC-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAAC 502 Query 36014 CGG 36016 ||| Sbjct 503 CGG 505 >seq2342 Length=4104 Score = 161 bits (178), Expect = 4e-35 Identities = 106/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 14164 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 14223 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 3988 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 4047 Query 14224 CTCCGGCACCATCTCATCAAAACTCGTCATGTACTTCTCATCCCGTTCGACCACGAC 14280 ||||||||||||||| |||||||||| |||||| || |||||||| || |||||||| Sbjct 4048 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGAC 4104 Score = 123 bits (136), Expect = 1e-23 Identities = 77/83 (93%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 2 TACTCCACCTTCCCATCAAGCCAGTCCGCCCACCACTGCATCATTTCTCTGCGCTTATCG 61 |||||||| || |||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 117 TACTCCACTTTTTCATCAAGCCAATCCGTCCACCACTGCATCATTTCTCTGCGCTTATCG 176 Query 62 AGATACTGAGCATGGTTGTAAAT 84 ||||||||||| ||||||||||| Sbjct 177 AGATACTGAGCGTGGTTGTAAAT 199 >seq3951 Length=514 Score = 100 bits (110), Expect = 1e-16 Identities = 84/102 (82%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 34996 GGGCTG--AATCATTACCGCGATAACGCCATAACCTACAAAGAGCAGCGCGATAAAAAAG 35053 |||||| ||||||||||| ||||||||||| |||||||||| |||||||| ||||| | Sbjct 413 GGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATG 472 Query 35054 TCAGTGAGCTGGAGCTGGCAAATGCAACCATTACTGATATGC 35095 ||| || ||| ||||||| || || | |||||||| |||| Sbjct 473 CCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGC 514 >seq2676 Length=3318 Score = 84.2 bits (92), Expect = 9e-12 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 34163 GTTTACCTCTTTCTCAGGGAGTTTAGTCTCCAGGATTTCCGGGGCGGTTCA 34213 |||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 1 GTTTACCTCTTTCTCAGGAAGTTTAGTCTCCAGGATTCCCGGGGCGGTTCA 51 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210896798571432