Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq3933 154 6e-33 seq11395 147 9e-31 seq8295 138 4e-28 seq6738 104 9e-18 >seq3933 Length=4962 Score = 154 bits (170), Expect = 6e-33 Identities = 301/447 (67%), Gaps = 42/447 (9%) Strand=Plus/Plus Query 6019 TTCAAGGGCCAGGTCAATGATTCGCAGATGGTCGCCCTGCTGATCGTGGCAGACCAGTAC 6078 || || ||| | | || ||| ||||| | |||| |||||||||| || |||||||| Sbjct 3605 TTTAAAGGCGATGCCAGCGATGCGCAGTTCATCGCATTGCTGATCGTCGCCAACCAGTAC 3664 Query 6079 AAACTGAACCCCTTCACCAAGGAGTTGTACGCATTCCCCGACAAGAACAACGGCATCGTG 6138 || || || | || || || | ||||| ||||| || ||| | ||||||||||| Sbjct 3665 GGCCTTAATCCGTGGACGAAAGAAATTTACGCCTTCCCTGATAAGCAGAACGGCATCGTT 3724 Query 6139 CCGGTTGTTGGTGTGGATGGCTGGGCTCGGATCATCAACGAGAACCCACAGTTCGATGGC 6198 ||||| || || || ||||||||| | || |||||||| || |||| ||||| ||||| Sbjct 3725 CCGGTGGTGGGCGTTGATGGCTGGTCCCGCATCATCAATGAAAACCAGCAGTTTGATGGT 3784 Query 6199 ATGGAATTCTCAATGGACCAGCAGGGAACCGAA---TGCACCTGCAAGATCTATCGGAAG 6255 ||||| || || |||||| | ||| ||||| ||| ||| || || ||| Sbjct 3785 ATGGACTT-----TG----AGCAGGACAATGAATCCTGCACATGCCGGATTTACCGCAAG 3835 Query 6256 GACCGCAGCCATGCCATCAGCGCGACTGAGTACATGGCCGAGTGC-------AA------ 6302 ||||||| ||| | ||| ||| || |||| |||| || ||| || Sbjct 3836 GACCGCAATCATCCGATCTGCGTTACCGAGTGGATGGATGAATGCCGCCGCGAACCATTC 3895 Query 6303 -------GCG--------GAA--CACCCAGCCTTGGCAGTCCCATCCGCGCCGGATGCTT 6345 ||| ||| |||| || |||||||| ||||| |||||| | Sbjct 3896 AAAACCCGCGAAGGCAGAGAAATCACCGGACCGTGGCAGTCGCATCCCAAACGGATGTTA 3955 Query 6346 CGCCACAAGGCAATGATTCAGTGCGCACGCCTCGCGTTCGGGTTCGCCGGCATATACGAC 6405 || || || || ||||||||||| || || || || ||||| || || || || || ||| Sbjct 3956 CGTCATAAAGCCATGATTCAGTGTGCCCGTCTGGCCTTCGGATTTGCTGGTATCTATGAC 4015 Query 6406 CAGGACGAGGCCGAGCGGATCGTTGAA 6432 |||| || |||||||| || || ||| Sbjct 4016 AAGGATGAAGCCGAGCGCATTGTCGAA 4042 >seq11395 Length=498 Score = 147 bits (162), Expect = 9e-31 Identities = 322/481 (67%), Gaps = 25/481 (5%) Strand=Plus/Minus Query 39997 AGCGCCGGGGCATCGGTCACCACG---ATCAAGCGACCGAGGATATCCACCACGCGCACG 40053 |||||||||||||| ||||| ||| ||| || |||| || ||||||||||| ||| Sbjct 462 AGCGCCGGGGCATCCGTCACAACGGAGATCTTGC---CGAGAATGTCCACCACGCGGACG 406 Query 40054 CCGTTGGATTGGAACAGTTGCTGAGCGTTGGTCAGATTCTGGCCAATGAAGGTGTGGAAC 40113 | || |||||||| ||||| ||| | ||| |||||||||| || |||| | Sbjct 405 TTGCCGGCCTGGAACAGCTGCTGCTGGTTCGCCAGGTTCTGGCCAACCAACTTGTGATAG 346 Query 40114 TGGGCACCATCCATAACTTGCGCGATGAG---CTGGCTAGAGTGGTCGCCGAACAGCGCG 40170 | || | ||| || || | || || |||||| | || |||||||| |||| Sbjct 345 CTCGTGCCCTGCATCACCTGGGTGACCAGGTTCTGGCTTGCGT---CGCCGAACTTCGCG 289 Query 40171 TGGCTATCGTTGACCGCAATGTAGTCCACTTTCTTGGCATCGGACACGTCGACAGTGGTA 40230 || | ||| | || |||| | | ||||| | ||| | Sbjct 288 TGTGCGTTGTTCAGGCCAGCGTAGGTGA-TGCNNNNNCATCG------TTGACCG----- 241 Query 40231 GCGGCGCCTTGGTTGCTGATGGCGGCTACCAGGGCGGCAACGGCTGTGTTCAACTGATCC 40290 ||||| | ||| | |||| ||||| ||||||||||| | |||||||||| ||| ||| Sbjct 240 -CGGCGGCCTGGGCGGTGATCGCGGCAACCAGGGCGGCGATCGCTGTGTTCAGCTGGTCC 182 Query 40291 TGCAGAAGAGACTCGGCGAAGTAGCGGGAGGCGACTTCGACACCTTCAGCAGTCGGCTTG 40350 | ||| || || ||||| ||| ||||||||||| |||| || || || Sbjct 181 TTCAGCAGGATTTCAGCGAACGCGCGACTGGCGACTTCGATGCCTTGCGCGGTTGGACGC 122 Query 40351 CGCAGCCAGGTCATTTGGGATGGTTCGTATCGAACCGGGCCGAAGCCACCAGCCACCTTG 40410 |||||| ||||| || ||||| ||||| || | ||| ||||||||||| || ||||| Sbjct 121 TCCAGCCAAGTCATCTGCGATGGCTCGTAGCGGATCGGACCGAAGCCACCGGCGACCTTC 62 Query 40411 ACGGTATTGTGCTTCAGCTGGGTCAGATCAACCGGAGTTACTGCGTCATTCGAGCCGTAG 40470 || | | | | |||||||| |||||||| | || || ||| | |||| || |||| Sbjct 61 ACCGAAGTATTCTTCAGCTCAGTCAGATCGGTTGCAGCGACAGCGGCGTTCGTGCTGTAG 2 Query 40471 C 40471 | Sbjct 1 C 1 >seq8295 Length=200 Score = 138 bits (152), Expect = 4e-28 Identities = 150/196 (77%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 23773 CGTAGTTGTTCGCCGGATTGTCGTAGCTGACCAAGGCACGGCTGTAGCGAGTGCGCTCAC 23832 ||||||||||| ||| |||||||||||||||| || ||| ||||| |||||||| Sbjct 200 CGTAGTTGTTCAGCGGGTTGTCGTAGCTGACCAGCGCCCGGGAATAGCGTGTGCGCTCCG 141 Query 23833 TGGCCGAGC-CG--TAGCTGAAGCGGCCGTCGATGACATTGGCCCTGGTGTAGGCGAAAT 23889 || || || ||| |||| ||| |||||||| || |||| |||||||||||| | Sbjct 140 ATGC---GCTCGAATAGGTGAACTTGCCATCGATGACGTTCGCCCGGGTGTAGGCGAAGT 84 Query 23890 CGACGTCGGTGGCGCGCGGGATATCCGCCTGGATCTTCAGTTGGCCCTGGGCCCAGTACG 23949 ||| ||| ||||||||||| ||||||| | || | | ||||||||||||||| || | Sbjct 83 CGAAGTCAGTGGCGCGCGGCATATCCGACAGGGTGAAGACTTGGCCCTGGGCCCAATAGG 24 Query 23950 CCATACCACGGTAGAT 23965 ||| || ||||| || Sbjct 23 TCATGCCTCGGTAAAT 8 >seq6738 Length=289 Score = 104 bits (114), Expect = 9e-18 Identities = 164/230 (71%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 35365 TCCTTA--CGCC-GCCAGGTATCGAAGCGGACGACCAGACAGGCCAATGCTGATGGTGCG 35421 |||||| |||| || ||||| || |||| |||| |||| || || |||||||||||||| Sbjct 274 TCCTTATGCGCCAGCTAGGTAGCGGAGCGAACGAGCAGAAAGCCCGATGCTGATGGTGCG 215 Query 35422 GGTCATCAACTGATTGCGCTCCATGGTCGGCGAACTG-GTGATGCTCACGTAGCCGGGAT 35480 ||||||| | ||||||||||||||||| | | | ||||| |||||||| || || | Sbjct 214 CGTCATCACGTTGTTGCGCTCCATGGTCGG-GTCCGGAGTGATACTCACGTAACCCGGGT 156 Query 35481 ACAGGATTTGGTCACCACTCGGCAGTTTCAGCCGGATGACGGTCAGTGCTTTCGTTTCCC 35540 | ||||| || || || | ||| |||| |||| || | || | || || || Sbjct 155 AGAGGATCTGATCGCCGTTACGCAACTTCATGCGGACCACCGCCAACTCCTTGGTATCGT 96 Query 35541 CAAGACTCTCGACCACATCGACATATGCGGCGGACGGCTGGTCTTCGACC 35590 || || ||||| ||||| || ||| | |||||||| || ||| Sbjct 95 CATAACCTTCGACGGTTTCGACGTACTGGGCCGTTGGCTGGTCCTCTACC 46 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194788241037404