Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq3933 443 8e-120 seq2271 360 7e-95 seq2342 176 2e-39 seq10411 127 8e-25 >seq3933 Length=4962 Score = 443 bits (490), Expect = 8e-120 Identities = 305/345 (88%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 23803 AGCATGCGCACCGCCTGCTCTCCCGACGGTTTATGCAGCGACGGTAACGGTCTTGAGCTT 23862 || ||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||| || Sbjct 4586 AGTATGCGCACCGCCTGCTCTCCCGATGGTTTATGCAGTGACGGCAACGGCCTTGAACTG 4645 Query 23863 AAATGCCCTTTTACTTCCCGCGACTTCATGAAATTCCGGCTTGGCGGCTTTGACGCTATC 23922 |||||||| ||||| ||||| || ||||||||||||||||| || || || || || || Sbjct 4646 AAATGCCCGTTTACCTCCCGGGATTTCATGAAATTCCGGCTCGGTGGTTTCGAGGCCATA 4705 Query 23923 AAGCCTGCTTACATGGCCCAGGTGCAATTCAGCATGTGGGTTACAGACAAGGACGCCTGG 23982 ||| | |||||||||||||||||||| | |||||||||||| || || || |||||| Sbjct 4706 AAGTCGGCTTACATGGCCCAGGTGCAGTACAGCATGTGGGTGACGCGAAAAGATGCCTGG 4765 Query 23983 TACTTCGCCAACTACGACCCACGCATGAAGCGTGAAGGCCTGCATTATGTCGTGGTCGAG 24042 ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 4766 TACTTTGCCAACTATGACCCACGAATGAAGCGTGAAGGCCTGCATTATGTCGTGGTTGAG 4825 Query 24043 CGGGATGAAAAGTACATGGCGAGTTTTGATGAGATGGTGCCGGAGTTCATCGACAAAATG 24102 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 4826 CGGGATGAAAATTACATGGCGAGTTTTGACGAGATGGTGCCGGAGTTCATCGAAAAAATG 4885 Query 24103 GACGAAGCACTGGCGGAAATTGGTTTTGTATTTGGAGAACAATGG 24147 ||||| |||||||| |||||||||||||||||||| || |||||| Sbjct 4886 GACGAGGCACTGGCTGAAATTGGTTTTGTATTTGGGGAGCAATGG 4930 Score = 226 bits (250), Expect = 1e-54 Identities = 204/254 (80%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 23472 CATGACACCAGAAATTATTCTCCAGCGAACTGGCGTGGATATTACCAGCC-TCGACCAGG 23530 ||||||||| || ||||| || ||||| || || | || | | ||| |||| |||| Sbjct 4284 CATGACACCGGACATTATCCTGCAGCGTACCGGGATCGACGTGAG-AGCTGTCGAACAGG 4342 Query 23531 GCGATGATGGATGGCACAAGCTGAGACTCGGTGTTATCACTGCTTCAGAAGTTCACAATG 23590 | ||||||| ||||||||| | | ||||| || ||||| ||||||||||||||||| | Sbjct 4343 GGGATGATGCATGGCACAAATTACGGCTCGGCGTCATCACCGCTTCAGAAGTTCACAACG 4402 Query 23591 TGATAGCAAAGCCACGTTCCGGCAGCAAATGGCCTGATACAAAAATGTCATACTTCCACA 23650 ||||||||||||| || || || | || |||||||| | |||||||| |||||||||| Sbjct 4403 TGATAGCAAAGCCCCGCTCAGGAAAGAAGTGGCCTGACATGAAAATGTCCTACTTCCACA 4462 Query 23651 CCCTGCTGGCTGAAGTTTGTACTGGCGTGGCACCGGAAGTTAACGCTAAGTCGCTCGCAT 23710 ||||||||||||| ||||| || || ||||| ||||||||||| |||||| |||| || | Sbjct 4463 CCCTGCTGGCTGAGGTTTGCACCGGTGTGGCTCCGGAAGTTAATGCTAAGGCGCTGGCCT 4522 Query 23711 GGGGAAAGCAATAC 23724 ||||||| || ||| Sbjct 4523 GGGGAAAACAGTAC 4536 >seq2271 Length=37941 Score = 360 bits (398), Expect = 7e-95 Identities = 396/524 (76%), Gaps = 5/524 (1%) Strand=Plus/Minus Query 30392 AAATACACCCTCATTTACGCAGATCCCCCCTGGACATTCCGCGACAAAGCAACCGATGGT 30451 |||||||| |||||||||||||| || || ||| || ||| ||||||||| |||| || Sbjct 10161 AAATACACTCTCATTTACGCAGACCCGCCTTGGGTATACCGTGACAAAGCAGCCGACGGC 10102 Query 30452 CAACGCGGTGCAAGTTTTAAATATCCGGTCATGAGTCTTCTGGATATCTGCCGCCTCCCG 30511 | ||||| || | || || |||||||| |||| | ||||| ||||||||||| || Sbjct 10101 GAGCGCGGCGCCGGCTTCAAGTATCCGGTTATGAACGTGCTGGACATCTGCCGCCTGCCT 10042 Query 30512 GTATGGGAACTGGCAGCCGATAATTGCCTGTTGTCTATGTGGTGGGTGCCTACACAACCA 30571 || ||||| ||||| ||||| |||||||| || ||||||||||||| || ||||| || Sbjct 10041 GTGTGGGATCTGGCTGCCGAAGATTGCCTGCTGGCTATGTGGTGGGTTCCAACACAGCCG 9982 Query 30572 CTTGAAGCATTGAAGGTTGTAGAAGCGTGGGGCTTTCGTCTGGTGACGATGAAAGGATTA 30631 ||||||| ||||||||| | ||||||||||| ||||| ||| |||||||||| ||||| Sbjct 9981 ATTGAAGCGTTGAAGGTTATCGAAGCGTGGGGATTTCGCCTGATGACGATGAAGGGATTC 9922 Query 30632 ACCTGGAACAAATGCGGGAAAAGACAGACCGACAAGCTGGTCATGGGTATGGGTAGCACC 30691 |||||| ||||| ||| | || | | ||| | ||| || ||||| || Sbjct 9921 ACCTGGCACAAA---ACGAATAAGCACAAAGGCAACAGCGCCATCGGCATGGGACACATG 9865 Query 30692 ACTCGCGCTAACAGCGAAGACTGCCTTTTTGCAGTGAAAGGAAATCTGCCCGAACGCATT 30751 || || || |||||||||||||| || ||||| ||| || || ||||| | ||||| Sbjct 9864 ACCCGGGCGAACAGCGAAGACTGTCTGTTTGCGGTGCGCGGGAAACTGCCGGCGCGCATG 9805 Query 30752 AACGCCGGAATAATCCAGTCAT-TCACTGCACCGCGCCTTGATCACTCCCGCAAGCCGGA 30810 |||| || |||| ||| |||| || |||||||| || |||| ||||||||||| Sbjct 9804 GACGCTTCGATCTGCCAG-CATGTCACGGCGCCGCGCCTGGAGAACTCGCGCAAGCCGGA 9746 Query 30811 TATGGCTCGAGAAAAGCTTGTGCAACTTCTTGGCGATGTTCCCCGGATAGAACTGTTCGC 30870 || |||| ||||| ||||| | ||||||||||| || || || || || ||||| Sbjct 9745 CGTGATCAGAGAGAAGCTGGTGCAGTTGCTTGGCGATGTGCCGCGCATCGAGCTATTCGC 9686 Query 30871 CCGCCACACCTCGCATGGATTTGATGTATGGGGTAACCAATGCG 30914 |||||| | |||||||| ||||| || ||||| ||||| |||| Sbjct 9685 CCGCCAGTCGTCGCATGGGTTTGACGTTTGGGGAAACCAGTGCG 9642 >seq2342 Length=4104 Score = 176 bits (194), Expect = 2e-39 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 24031 GTCGTGGTCGAGCGGGATGAAAAGTACATGGCGAGTTTTGATGAGATGGTGCCGGAGTTC 24090 |||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 4104 GTCGTGGTTGAGCGGGATGAAAATTACATGGCGAGTTTTGACGAGATGGTGCCGGAGTTC 4045 Query 24091 ATCGACAAAATGGACGAAGCACTGGCGGAAATTGGTTTTGTATTTGGAGAACAATGG 24147 ||||| ||||||||||| |||||||| |||||||||||||||||||| || |||||| Sbjct 4044 ATCGAAAAAATGGACGAGGCACTGGCTGAAATTGGTTTTGTATTTGGGGAGCAATGG 3988 >seq10411 Length=590 Score = 127 bits (140), Expect = 8e-25 Identities = 140/179 (78%), Gaps = 13/179 (7%) Strand=Plus/Minus Query 2487 CCGGTTTCTTCCACCACCGCACCGGACAGGCGGCTTCGCGGGAAATCGCTCCCATCTCGT 2546 |||||||||||||||| ||||||||| | ||| || | ||| || | || | ||| || Sbjct 505 CCGGTTTCTTCCACCATCGCACCGGAAAAGCGACTATGAGGGTAACC-CTGCG-TCT-GT 449 Query 2547 GAAAAATGAGAAAACCCGGTGTGCATCGTTTTTGATTATCCCCGCACACTCACGCAGA-- 2604 | | | ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 448 CAGCACAGT-AAAACCCGGTGTGCATCGTTTTTGATTATTCCCGCACACTCACGCAGAAG 390 Query 2605 TAA-----GGT--GGCTGCAGTCTCTGTTAATGCGGGAATACGGCGACGATACGGCGCA 2656 || || |||| | ||| ||||||||||||||||||||||||||| ||||| Sbjct 389 GAATTCCCCGTCGGGCTACGGTCATGGTTAATGCGGGAATACGGCGACGATACAGCGCA 331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195159382049548