Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_028685.1 Length=62851 Score E Sequences producing significant alignments: (Bits) Value seq3933 446 7e-121 seq2271 354 3e-93 seq2342 176 2e-39 seq10411 127 8e-25 seq3951 93.3 2e-14 >seq3933 Length=4962 Score = 446 bits (494), Expect = 7e-121 Identities = 306/345 (89%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 11622 CCATTGTTCTCCAAATACAAAACCAATTTCTGCCAGTGCTTCGTCCATTTTGTCGATGAA 11681 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 4930 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 4871 Query 11682 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGACATA 11741 ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 4870 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGACATA 4811 Query 11742 ATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 11801 ||||||||||||||||||||| |||||||| |||||||| ||||||||||| || || Sbjct 4810 ATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 4751 Query 11802 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 11861 || |||||||||||| | |||||||||||||||||||| | ||| || || || || || Sbjct 4750 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGAAACC 4691 Query 11862 GCCAAGCCGGAACTTCATGAAGTCGCGGGAAGTAAAGGGGCATTTAAGCTCAAGACCGTT 11921 || |||||||| |||||||| || ||||| ||||| |||||||| || ||||| ||||| Sbjct 4690 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCCGTT 4631 Query 11922 ACCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATGCT 11966 ||||||||||||||||||||||||||||||||||||||||| || Sbjct 4630 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACT 4586 Score = 224 bits (248), Expect = 4e-54 Identities = 203/253 (80%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 12046 TATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACAAACT 12105 || || |||||||| || |||| |||||| ||||||||||| ||||| || || ||||| Sbjct 4535 TACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGGTGCAAACC 4476 Query 12106 TCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGAACGT 12165 ||||||||||||||||||||||| |||||||| | |||||||| || | || || || Sbjct 4475 TCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGAGCGG 4416 Query 12166 GGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTTGTGC 12225 |||||||||||||| ||||||||||||||||| ||||| || ||||| | | |||||| Sbjct 4415 GGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTTGTGC 4356 Query 12226 CATCCATCATCGCCCTGGTCGA-GGCTGGTAATATCCACGCCAGTTCGCTGGAGAATAAT 12284 ||| ||||||| ||||| |||| ||| | | || | || || ||||| || ||||| Sbjct 4355 CATGCATCATCCCCCTGTTCGACAGCT-CTCACGTCGATCCCGGTACGCTGCAGGATAAT 4297 Query 12285 TTCTGGTGTCATG 12297 || ||||||||| Sbjct 4296 GTCCGGTGTCATG 4284 >seq2271 Length=37941 Score = 354 bits (392), Expect = 3e-93 Identities = 395/524 (75%), Gaps = 5/524 (1%) Strand=Plus/Plus Query 3099 CGCATTGGTTACCCCATACATCAAATCCATGCGAGGTGTGGCGGGCGAACAGTTCTATCC 3158 |||| ||||| ||||| || ||||| |||||||| | ||||||||||| || || || | Sbjct 9642 CGCACTGGTTTCCCCAAACGTCAAACCCATGCGACGACTGGCGGGCGAATAGCTCGATGC 9701 Query 3159 GGGGAACATCGCCAAGAAGTTGCACAAGTTTTTCTCGAGCCATATCCGGCTTGCGGGAGT 3218 | || ||||||||||| | ||||| || || |||| || ||||||||||| |||| Sbjct 9702 GCGGCACATCGCCAAGCAACTGCACCAGCTTCTCTCTGATCACGTCCGGCTTGCGCGAGT 9761 Query 3219 GATCAAGGCGTGGTGCAGTGA-ATGACTGGATTATTCCGGCGTTAATGCGTTCGGGCAGA 3277 || ||||| || || |||| ||| |||| || |||| ||||| | ||||| Sbjct 9762 TCTCCAGGCGCGGCGCCGTGACATG-CTGGCAGATCGAAGCGTCCATGCGCGCCGGCAGT 9820 Query 3278 TTTCCTTTCACTGCAAAAAGGCAGTCTTCGCTGTTAGCGCGAGTGGTGCTACCCATACCC 3337 || || ||| ||||| || |||||||||||||| || || || || ||||| || Sbjct 9821 TTCCCGCGCACCGCAAACAGACAGTCTTCGCTGTTCGCCCGGGTCATGTGTCCCATGCCG 9880 Query 3338 ATGACCAGCTTGTCGGTCTGTCTTTTCCCGCATTTGTTCCAGGTTAATCCTTTCATCGTC 3397 ||| | ||| | | || | ||| ||||| |||||| ||||| ||||||||| Sbjct 9881 ATGGCGCTGTTGCCTTTGTGCTTATTCGT---TTTGTGCCAGGTGAATCCCTTCATCGTC 9937 Query 3398 ACCAGACGAAAGCCCCACGCTTCTACAACCTTCAATGCTTCAAGTGGTTGTGTAGGCACC 3457 | ||| ||||| ||||||||||| | ||||||||| ||||||| || ||||| || ||| Sbjct 9938 ATCAGGCGAAATCCCCACGCTTCGATAACCTTCAACGCTTCAATCGGCTGTGTTGGAACC 9997 Query 3458 CACCACATAGCCAACAGGCAATTCTCGGCTGCCAGTTCCCATACCGGGAGGCGGCAGATA 3517 ||||||||||||| |||||||| ||||| ||||| ||||| || || ||||||||||| Sbjct 9998 CACCACATAGCCAGCAGGCAATCTTCGGCAGCCAGATCCCACACAGGCAGGCGGCAGATG 10057 Query 3518 TCCAGAAGACTCATGACCGGATATTTAAAACTTGCACCGCGTTGACCATCGGTTGCTTTG 3577 ||||| | |||| |||||||| || || | || ||||| | || |||| ||||||| Sbjct 10058 TCCAGCACGTTCATAACCGGATACTTGAAGCCGGCGCCGCGCTCGCCGTCGGCTGCTTTG 10117 Query 3578 TCGCGGAATGTCCAGGGGGGATCTGCGTAAATGAGGGTGTATTT 3621 || ||| || ||| || || |||||||||||||| |||||||| Sbjct 10118 TCACGGTATACCCAAGGCGGGTCTGCGTAAATGAGAGTGTATTT 10161 >seq2342 Length=4104 Score = 176 bits (194), Expect = 2e-39 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 11622 CCATTGTTCTCCAAATACAAAACCAATTTCTGCCAGTGCTTCGTCCATTTTGTCGATGAA 11681 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 3988 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 4047 Query 11682 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGAC 11738 ||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| Sbjct 4048 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGAC 4104 >seq10411 Length=590 Score = 127 bits (140), Expect = 8e-25 Identities = 140/179 (78%), Gaps = 13/179 (7%) Strand=Plus/Plus Query 33142 TGCGCCGCATCGTCGCCGTATTCCCGCATTAACAGAGACCGCAGCC--ACC-----TTA- 33193 ||||| | ||||||||||||||||||||||||| ||||| |||| || || Sbjct 331 TGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCCGACGGGGAATTCC 390 Query 33194 -TCTGCGTGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTTTTCA 33252 |||||||||||||||||| ||||||||||||||||||||||||||||| | | | | Sbjct 391 TTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTGCTGA 449 Query 33253 CGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAACCGG 33311 | ||| | || | || ||| | || ||| | ||||||||| |||||||||||||||| Sbjct 450 C-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAACCGG 505 >seq3951 Length=514 Score = 93.3 bits (102), Expect = 2e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 31696 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGAGATAAAAAAGTCAGAGAG 31755 || ||||||||||| ||||| | ||||||||||| ||||| || ||||| | |||||| Sbjct 421 AATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA 480 Query 31756 CTGGAGCTGGCAAACGCAACCATTACTGATATGC 31789 ||| ||||||| ||||| | |||||||| |||| Sbjct 481 CTGAAGCTGGCGAACGCGGCAATTACTGACATGC 514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200965618542824