Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq3951 529 5e-146 seq5569 118 3e-22 seq2342 86.0 2e-12 >seq3951 Length=514 Score = 529 bits (586), Expect = 5e-146 Identities = 332/358 (93%), Gaps = 0/358 (0%) Strand=Plus/Plus Query 38450 ATGGACAGTGTGTTACGGGCATACAGGCAAAGACATCATACCCGGTAAAACGTATACCGA 38509 |||||| || ||| ||||||||||||| ||||||||||| | |||||||||||||||| | Sbjct 1 ATGGACTGTATGTCACGGGCATACAGGAAAAGACATCATGCTCGGTAAAACGTATACCAA 60 Query 38510 GGCAGAATGCAAATCCCTCCTGAATAAAGACCTCGCTACTGTCGCCAGACAAATTAACCC 38569 |||||||||||| ||||||||||||||||||| || || |||||||||||||||||||| Sbjct 61 AGCAGAATGCAAAGCCCTCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCC 120 Query 38570 GTACATCAAAGTCGATATACCGGAAACAACGCGCGGCGCCCTTTACTCGTTCGTCTACAA 38629 |||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 121 GTACATAAAAGTTGATATACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAA 180 Query 38630 CGTTGGATCTGGCAATTTCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATAT 38689 ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CGTGGGCGCTGGCAATTTCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATAT 240 Query 38690 CAAAGGTGCATGTGATCAGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGG 38749 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 241 CAAAGGCGCATGTGATCAGCTACGTCGCTGGACATATGCTGGCGGTAAGCAATGGAAAGG 300 Query 38750 CCTGATGACTCGCCGTGAGATTGAGCGTGAAGTCTGTTTGTGGGGGCAGCAATGAACA 38807 || |||||||| |||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 301 TCTCATGACTCGTCGTGAGATTGAGCGTGAAATCTGTTTGTGGGGTCAGCAATGAACA 358 Score = 223 bits (246), Expect = 9e-54 Identities = 141/153 (92%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 38903 TAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGTCTGTCATGGGCTGTTA 38962 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 362 TAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTA 421 Query 38963 ATCATTACCGTGATAACGCCATTACCTACAAAGAGCAGCGCGATAAAAAAGTCAGTGAAC 39022 ||||||||||||||||||||||||||||||||| |||||||| ||||| | ||| |||| Sbjct 422 ATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAAC 481 Query 39023 TGAAGCAGGCGACCGCCACCATTACTGACATGC 39055 |||||| ||||| ||| | ||||||||||||| Sbjct 482 TGAAGCTGGCGAACGCGGCAATTACTGACATGC 514 >seq5569 Length=2135 Score = 118 bits (130), Expect = 3e-22 Identities = 136/181 (75%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 39553 GGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAG 39612 ||||||||||| | |||||||| | ||||||||| |||||||| ||||||||||||||| Sbjct 560 GGCACCCATTCTGTTTTCAGACTGCGGAAGAAGCGTTCCATTGGACTGTTATCCCAGCAG 501 Query 39613 TTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGC 39672 ||||| || || || | ||| ||| | |||| ||| | ||| || | || | | | | Sbjct 500 TTTCCCCGTCGGCTGACACTTTGCTTTATCCTGTAACGCCAGAGAAGTTGTTGATATTTC 441 Query 39673 CTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCAC--CCCGACGGGCTTACCAC 39730 | ||||| ||||| || || ||||| |||||||| || |||| |||| ||||| Sbjct 440 AGTCCTGTATATTGACTTCCCTGGTCGCTATGGAACATGACGTCCCG--CGGCTGACCAC 383 Query 39731 G 39731 | Sbjct 382 G 382 Score = 118 bits (130), Expect = 3e-22 Identities = 136/181 (75%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 16928 GGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAG 16987 ||||||||||| | |||||||| | ||||||||| |||||||| ||||||||||||||| Sbjct 560 GGCACCCATTCTGTTTTCAGACTGCGGAAGAAGCGTTCCATTGGACTGTTATCCCAGCAG 501 Query 16988 TTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGC 17047 ||||| || || || | ||| ||| | |||| ||| | ||| || | || | | | | Sbjct 500 TTTCCCCGTCGGCTGACACTTTGCTTTATCCTGTAACGCCAGAGAAGTTGTTGATATTTC 441 Query 17048 CTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCAC--CCCGACGGGCTTACCAC 17105 | ||||| ||||| || || ||||| |||||||| || |||| |||| ||||| Sbjct 440 AGTCCTGTATATTGACTTCCCTGGTCGCTATGGAACATGACGTCCCG--CGGCTGACCAC 383 Query 17106 G 17106 | Sbjct 382 G 382 >seq2342 Length=4104 Score = 86.0 bits (94), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 4/78 (5%) Strand=Plus/Plus Query 22734 CTCCATAAAACAAAACCCGTCGTAGCGAGTTCAGACAAAATAAATCCCCGCGAGTACGAG 22793 ||||||||||||||||||| ||||||||||||||| |||| |||||| || ||| |||| Sbjct 1979 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 2038 Query 22794 GATG----TTATTGCTGC 22807 |||| | |||||||| Sbjct 2039 GATGCTGTTCATTGCTGC 2056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132138998289200