Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_028699.1 Length=40740 Score E Sequences producing significant alignments: (Bits) Value seq3933 1442 0.0 seq4011 919 0.0 seq2342 86.0 2e-12 >seq3933 Length=4962 Score = 1442 bits (1598), Expect = 0.0 Identities = 1299/1626 (80%), Gaps = 11/1626 (1%) Strand=Plus/Minus Query 26431 TACTGTTTCCCCCAGGCCAGCGCCTTGGCGTTAACTTCCGGTGCCACGCCGGTGCAAACT 26490 |||||||| ||||||||||||||||| || ||||||||||| ||||| ||||||||||| Sbjct 4535 TACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGGTGCAAACC 4476 Query 26491 TCGGCAAGAAGGGTGAGAAAGTAGGACATCTTCATATCAGTCCACTTCTTGCCCGACTTT 26550 || || || |||||| | ||||||||||| ||||| |||| ||||||||| || || Sbjct 4475 TCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGAGCGG 4416 Query 26551 GGCCTGGAAATGACGTTGTGAACTTCGGAAGCAGTGATGACACCGAGGCGTAGACGGTGC 26610 ||| | | || |||||||||||||| ||||| |||||||| ||||| |||| |||| Sbjct 4415 GGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTTGTGC 4356 Query 26611 CACGCGTCATCACCTTGCTCGATGTTGCTAACGTCAATACCTGTACGAGCCAGGATAATT 26670 || || ||||| || || |||| || ||||| || || ||||| ||||||||| Sbjct 4355 CATGCATCATCCCCCTGTTCGACAGCTCTCACGTCGATCCCGGTACGCTGCAGGATAATG 4296 Query 26671 TCTGGTGTCATGCTTCCACCTTCTGTTCTGCAGCTTTCTGTTTCAGGAATCCGAGGGCTT 26730 || ||||||||||| |||||||||| || | |||||||||||||||||||| || |||| Sbjct 4295 TCCGGTGTCATGCTGCCACCTTCTGCTCAGTGGCTTTCTGTTTCAGGAATCCAAGAGCTT 4236 Query 26731 TCACTGCTTCGATTTGCGTAAGATCTGACGATGCACCAATATCGCGGCGGAAGATTTGGG 26790 ||||||||||| || || || ||||||||||| | ||| |||||||| || || |||| Sbjct 4235 TCACTGCTTCGGCCTGTGTCAGTTCTGACGATGCGCGAATGTCGCGGCGAAATATCTGGG 4176 Query 26791 AGCAGAGCGGCAGCAGATCGTCATCCCATGTTTTATTCATGGTGATCAGCAGATCATTAA 26850 | |||||||||| | ||||||||||||||||||| || || |||||||||| |||| Sbjct 4175 AACAGAGCGGCAATAAGTCGTCATCCCATGTTTTATCCAGGGCGATCAGCAGAGTGTTAA 4116 Query 26851 TTTCCCGCATGGTTTCATCGCTAACCGGAGTGATGTCGCGTTCCGGCTGGCGATCTGTGG 26910 | ||| |||||||||||||| |||||||||||||||||||||||||||| || |||| | Sbjct 4115 TCTCCTGCATGGTTTCATCGTTAACCGGAGTGATGTCGCGTTCCGGCTGACGTTCTGCAG 4056 Query 26911 TATACGTGGTATTTTCGACAATGCGTTCGGCCTCATCCTTGTCGTAGATGCCTGCGAAAC 26970 | || | |||||||||||||||||| ||||| ||||||||||| ||||| || || || | Sbjct 4055 TGTATGCGGTATTTTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAATC 3996 Query 26971 CGAAGGCAAGACGGGCGCACTGGATCATTGCTTTGTGTCGCAACATCCGTTTGGGATGTG 27030 ||||||| |||||||| ||||| ||||| ||||| || || ||||||||||||||||| | Sbjct 3995 CGAAGGCCAGACGGGCACACTGAATCATGGCTTTATGACGTAACATCCGTTTGGGATGCG 3936 Query 27031 ACTGCCACGGTCCAGTAATCTCACGACCATCACGGGTTTTGAATGGTTCCCGGCGACATT 27090 ||||||||||||| || || || | || || ||||||||||||||||| ||||| |||| Sbjct 3935 ACTGCCACGGTCCGGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTTCGCGGCGGCATT 3876 Query 27091 CATCCATCCATTCGGTAACGCAGATCGGATGGTTACGGTCCTTACGGTAAATCCTGCATG 27150 |||||||||| |||||||||||||||||||| || |||||||| |||||||||| ||||| Sbjct 3875 CATCCATCCACTCGGTAACGCAGATCGGATGATTGCGGTCCTTGCGGTAAATCCGGCATG 3816 Query 27151 TACATGATTCGTTATCCTGCTCAAAATCCATACCGTCAAACTGCTGGTTTTCGTTGATGA 27210 | || ||||| || ||||||||||| |||||||| ||||||||||||||||| ||||||| Sbjct 3815 TGCAGGATTCATTGTCCTGCTCAAAGTCCATACCATCAAACTGCTGGTTTTCATTGATGA 3756 Query 27211 TACGGGACCAGCCATCAACACCCACCACAGGGACGATCCCGTTCTGCTTATCAGGAAAGG 27270 | ||||||||||||||||| |||||||| || ||||| ||||||||||||||||| |||| Sbjct 3755 TGCGGGACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGG 3696 Query 27271 CGTAAATTTCTTTCGTCCACGGATTAAGACCGTACTGGTTGGCGACTATCAGTAGCGCAA 27330 |||||||||||||||||||||||||||| ||||||||||||||||| ||||| | || | Sbjct 3695 CGTAAATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGATCAGCAATGCGA 3636 Query 27331 TAAACTGCGCATCACTGGCGTCACCTTTAAAAGCTGTCTGGCGCAATGTGGTGATCAGTT 27390 | ||||||||||| ||||| || |||||||| || |||||||| | ||||||||||||| Sbjct 3635 TGAACTGCGCATCGCTGGCATCGCCTTTAAATGCCGTCTGGCGAAGAGTGGTGATCAGTT 3576 Query 27391 CCTGCGGATCTACAGAATCCATTCCTACACGTTCTGCCAGCTTTCCTGCCAGTGTTGCGA 27450 |||| || || ||||||||||| || |||||||| |||||||| || ||||| ||||||| Sbjct 3575 CCTGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCTTCCCAGCCAGCGTTGCGA 3516 Query 27451 GTGCTGTGCTCATTTGTCTTATTCCTCTGATTCAATATCAATTTGATGCCGGGAAAACAC 27510 ||||||| ||||| || |||| ||||||| |||||||||| ||||| | | || Sbjct 3515 GTGCTGTACTCATCCGTTTTATACCTCTGAATCAATATCAACCTGATGGTGAGCAATGGT 3456 Query 27511 TTCAACCATGTACCGCACAAACTCCGACGCACGCTCCTGGAACTCGACATCGTCATCAAA 27570 ||||||||||||||| | || | | |||||||| ||||| |||||||||||||| Sbjct 3455 TTCAACCATGTACCGGATGTGTTCTGCCATGCGCTCCTGAAACTCAACATCGTCATCAAA 3396 Query 27571 TGCACGGCTGATCGCCTTTTTGTTGGCGCCGTGGCGCGGTAACTCGTCCATACACAGCGA 27630 ||||||| | || || |||||| |||| ||| ||| |||| | || || || ||||| Sbjct 3395 TGCACGGGTAATGGCTTTTTTGCTGGCCCCGCAGCGTTGTAAATGATCGATGCAGAGCGA 3336 Query 27631 CTCCAGCATGTGAAGCGACAGTCCTTTCTCCAGGTCGTCAGCCAGTTCGGACTCTTTCTC 27690 || | || || | | ||| ||||| |||| |||||| |||||||| | ||||||||| Sbjct 3335 TTCAAACAAATGCTGGGGCAGGCCTTTGTCCATGTCGTCTGCCAGTTCTGCCTCTTTCTC 3276 Query 27691 TTCTCTGGCGATTTGCTGGTAATGCCGGGTCCAGTTCTGAGCCTCGATCCGGTCGTAAGT 27750 ||| | |||||| |||||||| || || | |||| |||||||||| | || || | | | Sbjct 3275 TTCACGGGCGATCTGCTGGTAGTGACGCGCCCAGCTCTGAGCCTCAAGACGATCCTGAAT 3216 Query 27751 GAGATATGCGTTCATGGCTGAACTCCTGAATTTTG-TTTGCAGA-ATCCCCTGCGCGATG 27808 | ||| ||||||||||||||||||||||| | | | || | | ||| || ||||| Sbjct 3215 GTAATAAGCGTTCATGGCTGAACTCCTGAAAATGGCTGTGAAAATATCGCC--CGCGA-- 3160 Query 27809 AAAGCC-GCCTGATAGCTCAGTTAAATTCTTTGTTTCTATTACCGGCTGAGGCCTTGGCC 27867 || ||| | |||| | || ||| ||| | | ||||| | || Sbjct 3159 AATGCCAGGCTGA----TTAGGAAAACAAGAAAGGGGGGTTAGTGATTCAGGCCGTTACC 3104 Query 27868 AAACCCGTTCAAATAGACTTCAACCAGCAAATCGGTTGTGTAAGTGCGCTCAATGCCGCG 27927 |||| | | | ||||| || |||||||| || ||||||||||| |||||||| Sbjct 3103 GCGTCCGTCGAGAAAAACTTCCACGAGCAAATCACGGGTATAAGTGCGCTCGATGCCGCG 3044 Query 27928 ATGCAGGTAGAGGCGACCGCGTTTGTTTGCTGATGCAGTCCAGGTGCCTTCACGATGCTT 27987 |||||| || || || |||||| || ||||||||||||||||| || || || || Sbjct 3043 ATGCAGATAAAGCCGTCCGCGTAAATTAGCTGATGCAGTCCAGGTACCATCTTTGTGTTT 2984 Query 27988 TACGAGCATTCCGGGCATAACGGCACCGCGGTTAACGGTCTGGGTTCCATAGTGATGACT 28047 || |||||||| ||||| || ||||| || ||||||||||| ||||| || || ||| Sbjct 2983 GACCAGCATTCCTGGCATGACCGCACCTCGATTAACGGTCTGCGTTCCGTAATGTTGATG 2924 Query 28048 AATCAT 28053 || ||| Sbjct 2923 AACCAT 2918 Score = 257 bits (284), Expect = 4e-64 Identities = 268/352 (76%), Gaps = 0/352 (0%) Strand=Plus/Minus Query 25997 TGCGTCATCGCCACTGCTCCCCGAACGTGAAGCCAATCTCCTTTAGCGCTTCGTCCATCT 26056 ||||||||||||| |||||||| || || ||||| || || || |||||||| | Sbjct 4940 TGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTT 4881 Query 26057 TTTCGATAAATTCCGGTACCATTTCGTTGAAGAGGGACATGTATTTGTCGTCTCGCTCAA 26116 ||||||| || ||||| ||||| |||| || | |||||| || || || ||||||| Sbjct 4880 TTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAA 4821 Query 26117 CAACCACGTGGTGGATACCTTCTCGTTTCATGCGCGGGTCATAATTCGCGAAATACCATG 26176 | || || | || | ||||| || ||||| || |||||||| || || || ||||| | Sbjct 4820 CCACGACATAATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGG 4761 Query 26177 CATCTCTCCCGGTTACCCACATGCTGAATTGCACCTGGGCCATATAGGCGGATTTGATAG 26236 ||||| | | || |||||||||||| | |||||||||||||| || || || || || | Sbjct 4760 CATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGG 4701 Query 26237 CCTCGAAGCCGCCAAGCCTGAATTTCATAAAGTCGCGAGAGGTGAAAGGGCACTTCAACT 26296 ||||||| || || |||| ||||||||| || || || ||||| || ||||| |||| | Sbjct 4700 CCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTT 4641 Query 26297 CAAGACCGCGGCCATCACTGCACAGGCCGTCAGGAGAACAGGCGGTACGCAT 26348 |||| ||| ||| |||||||| | || || ||||| |||||||| ||||| Sbjct 4640 CAAGGCCGTTGCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCAT 4589 >seq4011 Length=1784 Score = 919 bits (1018), Expect = 0.0 Identities = 898/1156 (78%), Gaps = 6/1156 (1%) Strand=Plus/Minus Query 30921 CACAAAAGACAAACTAACAAAAGACAATATTAAAAGATCTACGTCCGAGAATTCTGACGA 30980 |||||||||||||||||||||||||||||| ||| | | ||||||||||||||||||| Sbjct 1221 CACAAAAGACAAACTAACAAAAGACAATATAAAACCTTTTTCGTCCGAGAATTCTGACGA 1162 Query 30981 ATCCTCTGACAAGCCAAGAAAGAAACCTCATGTTCTAAAACCCGAAGCAGCGATTCAGAG 31040 |||||||||| ||||| ||| | | || ||| | ||||| || || || |||||||| Sbjct 1161 ATCCTCTGACCAGCCAGAAAACGATCTTCCTGTGATGAAACCGGATGCTGCAATTCAGAG 1102 Query 31041 AGGCAACAAGTGGGGAACTGCTGAAGACCTAACTGCTGCCGAGTGGATGTTTGACCTGAT 31100 |||| ||||||||| || || |||||||| || || || ||||||||||||||| || | Sbjct 1101 CGGCAGCAAGTGGGGGACAGCAGAAGACCTGACCGCCGCAGAGTGGATGTTTGACATGGT 1042 Query 31101 AAAAACCATTTCTCCATCAGCCAGAAAACCTAACCTGGCAGGATGGGCTAACGATATACG 31160 || ||||| | ||||||||||||||||| || | ||||| |||||||||||||| || Sbjct 1041 GAAGACCATCGCGCCATCAGCCAGAAAACCGAATTTTGCAGGGTGGGCTAACGATATCCG 982 Query 31161 CCTGATGCGTGAATGTGACGGACGAACACATCGCGACATGTGCGTGCTGTTTCGCTGGGC 31220 ||||||||||||| |||| ||||| | || |||||||||||||||||||| |||||||| Sbjct 981 CCTGATGCGTGAACGTGATGGACGTAACCACCGCGACATGTGCGTGCTGTTCCGCTGGGC 922 Query 31221 GTGCCATGACAGCTTCTGGGCTGGCAACGTCATTAGCCCGGCAAAGCTCCGCGAAAAGTG 31280 ||||| |||| ||||||| | || ||||| | || ||||| || |||||||| ||||| Sbjct 921 ATGCCAGGACAACTTCTGGTCCGGTAACGTGCTGAGTCCGGCTAAACTCCGCGACAAGTG 862 Query 31281 GACTCAACTCGATATCAACCGCAACAAGCAACAGACTGGCACAACTGCCTCTAAGTCAAA 31340 ||| || ||||| |||||||| |||||||||||| ||||| || ||| || |||| Sbjct 861 GACCCAGCTCGAAATCAACCGTAACAAGCAACAGGCTGGCGTGACAGCCAGAAAACCAAA 802 Query 31341 ACTTGACCTGAATAACACTGACTGGATATACGGAGTGGAGCTATGAAAAACATTGCTGCG 31400 ||| ||||||| |||||||||||||| ||||| ||||| |||||||||||| || || Sbjct 801 ACTCGACCTGACAAACACTGACTGGATTTACGGGGTGGATTTATGAAAAACATCGCCGCA 742 Query 31401 CAGATGGTTAATTTTGACCGTGAGCAGATGCGCCGTATTGCCAACAACATGCCGGAACAG 31460 ||||||||||| |||||||||||||||||||| || || ||||||||||||||||||||| Sbjct 741 CAGATGGTTAACTTTGACCGTGAGCAGATGCGTCGGATCGCCAACAACATGCCGGAACAG 682 Query 31461 CATAACGATAAGCCGCAAGTTGAGCAGGTTGCTAAGGTCATCAACAACGTGTTTAGTCAG 31520 | |||| |||||||| || | ||||| || || |||||||| ||||| || ||| Sbjct 681 TACGACGAAAAGCCGCAGGTACAACAGGTAGCGCAGATCATCAACGGTGTGTTCAGCCAG 622 Query 31521 CTTATGGCAGCGTTCCCTGCTACCACAGCTAATCGCAGCCAGGCTGAGATGAACGAAATC 31580 | ||||| | ||||| || | | ||||| || |||| ||| ||||||||||| Sbjct 621 TTACTGGCAACTTTCCCGGCGAGCCTGGCTAACCGTGACCAGAATGAACTGAACGAAATC 562 Query 31581 CGGCGTCAGTGGGTTCTGGCTTTCCGTGAGAACGACATCACCACCATGGAGCAAGTTGCG 31640 || || |||||||||||||||||||| || |||| |||||||| ||||| || ||| Sbjct 561 CGCCGCCAGTGGGTTCTGGCTTTCCGGGAAAACGGGATCACCACAATGGAACAGGTTAAC 502 Query 31641 GCCGGAATGCGTGTCGCCCGCCGTCAGGAACGTCCGTTTCTTCCGTCTCCAGGCCAGTTT 31700 || |||||||| || ||||| || ||| | || || || || || || || || |||||| Sbjct 501 GCAGGAATGCGCGTAGCCCGTCGGCAGAATCGACCATTCCTGCCATCACCCGGGCAGTTT 442 Query 31701 GTCGCATGGTGTAAGGCTGAATTGGCAACTGCT---GCCGGGCTTCCTGATGCCAATGAA 31757 ||||| ||||| || ||| ||| | | | |||||||| || | | || || Sbjct 441 GTCGCCTGGTGCCGGGAAGAA---GCATCCGTTAACGCCGGGCTGCCAAACGTCAGCGAG 385 Query 31758 CTGGTCGATATGGTTTACCAGTATTGCCGCACGCGTGGTTTATACCCGGATGCAGAATCA 31817 ||||| |||||||||||| |||||||||| | |||||| | || ||||||||||| || Sbjct 384 CTGGTTGATATGGTTTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCT 325 Query 31818 TATCCATGGGAATCCAAAGCCCATTACTGGCTTGTCACCACACTGTACTCAAACATGCGA 31877 ||||| ||| |||| || || ||||||||||| || |||| |||||| |||||||| Sbjct 324 TATCCGTGGAAATCGAACGCGCATTACTGGCTGGTTACCAACCTGTACCAGAACATGCGG 265 Query 31878 GCTAACGCTCTTAGTGATACCGAGTTGCGCCGCAAGGCAGTCGAAGAACTCAACCACATG 31937 || || || |||| |||| | || || || |||||||| | ||| ||||| | ||| Sbjct 264 GCCAATGCGCTTACTGATGCGGAATTACGGCGCAAGGCTGCCGATGAACTGTCCTGTATG 205 Query 31938 GTTACCAGGATAAACCGTGGAGAGGTGATCCCGGAGCCAGTTAAGCAGCTTCCTGTTCTT 31997 | | || |||||||| |||| ||| || || ||||| || ||||||||||| | Sbjct 204 ACCGCGCGAATTAACCGTGGTGAGGCGATACCTGAACCAGTAAAACAGCTTCCTGTCATG 145 Query 31998 GGTGGCAGACCACTAAACCGCGCGCAAAACCTCGCGAAGATTGCAGAAATTCGGGCCAAA 32057 || || ||||| ||||| || || || || |||||||| |||||||| || || Sbjct 144 GGCGGTAGACCTCTAAATCGTGCACAGGCTCTGGCGAAGATCGCAGAAATCAAAGCTAAG 85 Query 32058 TTCGGACTAAAGGGAG 32073 || || || || |||| Sbjct 84 TTTGGGCTGAAAGGAG 69 Score = 158 bits (174), Expect = 3e-34 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 30472 GGAGTAATTATGGCAAACACTGCCGAAGTAATCAATTTTCCTGTGCCTGACGTGGCACCT 30531 |||| |||||||||||||||||| || || |||||||||| ||||| || ||||||| Sbjct 1694 GGAGGAATTATGGCAAACACTGCTGAGATATTCAATTTTCCAGTGCCGGATGTGGCACAA 1635 Query 30532 AAGGAGCCGCGCGTGGCAGATCTCGATGATGGCTATACGCGCCTGGCAAATGAACTTCTG 30591 ||||||| |||||||||||||||||| ||||| ||||||||| | |||||||| | ||| Sbjct 1634 AAGGAGCGGCGCGTGGCAGATCTCGACGATGGTTATACGCGCATTGCAAATGAGTTGCTG 1575 Query 30592 GATGCCGTGATGTGTTCTGGTTTGCCGGAGACTGAGCTGTGCATCCTGATGGCCGTATGG 30651 || || |||||| | || || | || |||| || | |||| || | Sbjct 1574 GAAGCTGTGATGCTGGCCGGATTAACACAGCACCAGCTTCTGGTCTTCCTGGCTGTCATG 1515 Query 30652 CGCAAAACGTATGGATACAACAAGAAAATGGACTGGATCAGCAACGAGCA 30701 |||||||| ||||| | || || | | |||| ||| | ||||||||||| Sbjct 1514 CGCAAAACATATGGCTTTAATAAAAGACTGGATTGGGTGAGCAACGAGCA 1465 >seq2342 Length=4104 Score = 86.0 bits (94), Expect = 2e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 25997 TGCGTCATCGCCACTGCTCCCCGAACGTGAAGCCAATCTCCTTTAGCGCTTCGTCCATCT 26056 ||||||||||||| |||||||| || || ||||| || || || |||||||| | Sbjct 3978 TGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTT 4037 Query 26057 TTTCGATAAATTCCGGTACCATTTCGTTGAAGAGGGACATGTATTTGTCGTCTCGCTCAA 26116 ||||||| || ||||| ||||| |||| || | |||||| || || || ||||||| Sbjct 4038 TTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAA 4097 Query 26117 CAACCAC 26123 | || || Sbjct 4098 CCACGAC 4104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130225702381768