Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq1087 145 3e-30 seq8098 111 6e-20 >seq1087 Length=202632 Score = 145 bits (160), Expect = 3e-30 Identities = 322/478 (67%), Gaps = 10/478 (2%) Strand=Plus/Minus Query 32679 AAGGCGAAGCTCCTGATCGTGGACGAGTCCTCCATGGTGGACGAGCAGGTGGGAGAAGAC 32738 ||||| ||||| | |||| ||||||| ||| ||||||||||| ||| | || || Sbjct 68772 AAGGCCAAGCTGATCGTCGTCGACGAGTGCTCGATGGTGGACGAACAGCTCGGCCGCGAT 68713 Query 32739 CTGCTGTCCTTCGGGGTGCCGATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCCGTC 32798 || || |||||| || || || | ||||||||||| | ||||||||||||| | Sbjct 68712 CTCATGAGCTTCGGCACCCCCATTCTGGTGCTGGGCGACCCTGGCCAGCTGCCGCCCATA 68653 Query 32799 ATGGGGGCCGGGTTCTTCACCAAGCAGAAGGCCGACTTCCTCCTGACCGACATCCACCGA 32858 || | ||| ||||||||| | || || | || ||||| || | ||| |||||||| Sbjct 68652 TCCGGCGGCGGCTTCTTCACCGAACACGAGCCGGATTTCCTGCTCAGCGAAATCCACCGG 68593 Query 32859 CAGGCCCGCGACAACCCGATCATCGAGATGTCTCGCATCGTCCGCGAAGGCGGTGCCCT- 32917 ||||| ||||||||||||||| | || | | | ||| ||||| || ||| | Sbjct 68592 CAGGCGCGCGACAACCCGATCCTGCGCCTGGCGCTCGACGTGCGCGAGGGACGTGAATTC 68533 Query 32918 GTCCCTGGGTCG-CTACGGGGAGAGCGAGGTGGTGCGCATGGCTGACTTCCAGCGCGACT 32976 | | ||| || | ||| | | | |||| | || | || | || || Sbjct 68532 GGCTATGG--CGATTTCGGTGCGGCCAAGGTCATCTCCAAGAACGAGGTGACGCAGGATC 68475 Query 32977 GGGTGTTCCAGGCCGACCAGATCCTGGTCGGGAAGAACGACACCCGCCGTGCCTACAACC 33036 |||| || ||||| ||| | ||||| || | |||| ||||||||| ||| || | Sbjct 68474 TGGTGCTCGGCGCCGATCAGGTGCTGGTGGGTACGAACCGCACCCGCCGCCGCTATAATC 68415 Query 33037 GCCGCATCCGCGAGCTCCGAGG---AGCCGCTCAGGCGTACCCGCACCAGGGAGACAAGC 33093 ||| | ||||||||| ||| ||||| | | ||||| ||| ||||||| Sbjct 68414 AGCGCCTGCGCGAGCTCAAAGGTTTTTCCGCT---TCCTTTCCGCAGGCGGGCGACAAGC 68358 Query 33094 TGGTCTGCCTGCGGAACAACCACGACTCTGGCCTGCTGAACGGCTCGCTCTGGACGGT 33151 |||| |||||||| ||| | | | | || ||||| ||||||||||| |||| ||| Sbjct 68357 TGGTGTGCCTGCGCAACGATCCGGCCAAGGGGCTGCTCAACGGCTCGCTGTGGAAGGT 68300 >seq8098 Length=417 Score = 111 bits (122), Expect = 6e-20 Identities = 203/292 (70%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 5917 CGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAGATGAGAAGCTCGGCTTCCTGCCCGGC 5976 ||| || || ||||||| |||||||| ||||| | ||| |||||| ||||| |||||| Sbjct 23 CGCATCATCCTCACCCGTCCCGCCGTCGAGGCGGGGGAGCGGCTCGGGTTCCTCCCCGGC 82 Query 5977 ACTGTGGACGAGAAGATGGCACCCTACCTCACCCCGATGCTGGACGCGGTGATCGACCTG 6036 || | || ||||| | || ||||| |||| || |||||| ||| ||| || Sbjct 83 ACCCTCACGGACAAGATCGATCCGTACCTGCGCCCGCTGTACGACGCGCTGAACGAGATG 142 Query 6037 GTCGGCCCGACGATGACGAAGCGCCTCCTCGAGTCGCGCCAGCTGGAGGTCGCCCCGCTG 6096 | | ||| ||| | ||| || | | | || || | | || ||||||||||| Sbjct 143 ATGGACCCCGAGATCGTGCCGCGACTGATGGCGACGGGCACGATCGAAGTCGCCCCGCTC 202 Query 6097 GCCTACATGCGAGGCCGGACGTTCAACGACACGTACATCGTCGCT-GACGAGATGCAGAA 6155 ||||||||||| ||||| || |||||||| | | | | || ||| || ||| |||||| Sbjct 203 GCCTACATGCGCGGCCGCACCCTCAACGACTCCTTCGTGGT-GCTCGATGAGGCGCAGAA 261 Query 6156 CGCCAC-CCCGCGCCAGACCGCGCTGCTGGTGACCCGCCTGGGCTTCGGGAC 6206 | | || |||| | |||| | || | | || ||||| |||||||| || Sbjct 262 CACGACTCCCGAG-CAGATGAAGATGTTCCTCACGCGCCTCGGCTTCGGCAC 312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191457570402560