Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq5514 304 4e-78 seq2755 230 7e-56 seq10553 196 2e-45 seq892 147 7e-31 seq3745 84.2 7e-12 >seq5514 Length=778 Score = 304 bits (336), Expect = 4e-78 Identities = 515/753 (68%), Gaps = 48/753 (6%) Strand=Plus/Plus Query 39308 ACCTGCTCCTGGTAGATGATGAGCCCGTACGTCGGGTCCAGGATCTCCCGCAGGGGCTCC 39367 ||||||||||||||||||||||||||||| | | ||||||||||| || ||| || Sbjct 24 ACCTGCTCCTGGTAGATGATGAGCCCGTAGGACTCCTCCAGGATCTCGGCGAGCGGCGCC 83 Query 39368 TCCACCTCGGGGTGAATCGGCGAGATCGCCTGCTGTCCATTCTTCCGGAGGGCATAGTTC 39427 |||| ||||||||| ||||||| |||| ||||| || ||||| || || ||||||||| Sbjct 84 TCCAGCTCGGGGTGGATCGGCGTGATCTCCTGCACCCCGTTCTTGCGCAGCGCATAGTTC 143 Query 39428 GTGTGTGAGCCAACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCC 39487 ||||| ||| | ||||| |||||||| || ||||| |||| || |||||||||||| Sbjct 144 GTGTGCGAGTTGGCTCCCATGGGACCCGGCCGATACAGGGCGATGAGGGCCGAGATGTCA 203 Query 39488 TCGAAGTTGTCGGGCTTCAGCAGGCGGAGCAGGGAGCGC--------------------- 39526 |||||||||||||||||| ||| || | || Sbjct 204 CCGAAGTTGTCGGGCTTCATCAGACGCATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNN 263 Query 39527 -----------------ATCGCACCGCCGTCGAGCTGGAACACCGAGAGCGTGTCACCCT 39569 | || || |||||||||||| || || ||||| || Sbjct 264 NNNNNNNNNNNNNNNNAAGCGGCGGGCTGTCGAGCTGGAAGACGCCCAGGGTGTCGCCGC 323 Query 39570 TGGCCAGCAGCTCGT--AGGTCGGGGCGTCGTCCAG--CGGGATGTTCTCCAGGTCGACG 39625 || ||||||| || | | |||| |||||| || || ||||| || ||||||| Sbjct 324 GCGCGAGCAGCTGGTACACGCCGGG--GTCGTCGAGACCGAGATGT--TCGAGGTCGAGC 379 Query 39626 TGCTCCCCACGGTTACGACGGATGTTCTCGACGGCGTCGCCCATGATCGTGAGGTTCCGC 39685 | || |||||||| |||||||| |||| || || ||||||||||||||||| Sbjct 380 TCTTCGCCACGGTTCGTGCGGATGTTGTCGAGCGCATCCGAGATGATCGTGAGGTTCCGG 439 Query 39686 AGGCCGAGGAAGTCCATCTTGACCGCGCCCATGCTCTCGCACTGGGGGTAGTCCCACTGC 39745 || || |||||||||||||||| | || | | ||||||| |||||||| ||||| Sbjct 440 AGCCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCACGACGGGTAGTCGAACTGC 499 Query 39746 GTGACGGTGACGCCGTCC-GCAGGACGGACCCACACCGGAAGGTGATCGACCAGGGGCTC 39804 |||||| | ||| || || | ||| | | ||||| | |||| || || || Sbjct 500 GTGACGATCTGCCCGGCCTGCTCG-CGGCGCATGATCGGAATGATGTCGAGGAGCGGATC 558 Query 39805 GTTGGACATGATCACACCGGCCGCGTGCACGCCCATCTGGCGAACCAGACCTTCGAGCCC 39864 | ||||||||||| ||||| |||||||||||| |||||| ||| |||||||| || Sbjct 559 GGACGACATGATCACGCCGGCGGCGTGCACGCCCCACTGGCGCTTCAGCCCTTCGAGACC 618 Query 39865 GAGCGCAGTGTCGATCACCTCCTTCGAGTCCTTGTCGTTCTCGTACAGGCCCCGGATCTC 39924 ||||| ||||| ||| ||||| || || ||||| |||| || || ||| Sbjct 619 CAGCGCGCGGTCGAAGACCGTCTTCGCCTCGGGATCCGTCTCGATCAGGGTCCTGAACTC 678 Query 39925 GCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGAAGATCCCCTCCAGGGGCATCGACGC 39984 || ||| || | ||| | |||||| | | || ||| || || || |||||||| | Sbjct 679 GCTCGCTTCCTTGTACCTCGGGTGAGCAGAGTCGAACATGCCGTCGAGGGGCATGTCCTT 738 Query 39985 GCCCATCACATCGGCCGGGTACGCCTTGGTCAG 40017 ||||||||| | ||| ||||||||| || Sbjct 739 GCCCATCACGGGCGGCGGCATCGCCTTGGTGAG 771 >seq2755 Length=1107 Score = 230 bits (254), Expect = 7e-56 Identities = 484/705 (69%), Gaps = 24/705 (3%) Strand=Plus/Minus Query 40639 CATCTCGGCGGCCGTCTTGATGTAGTACCCGGAGCCCTCGAACCGGAAGCGGTTCGGGTT 40698 ||||||||| || |||||||||||||||||| ||| |||||| ||| |||||||||| Sbjct 887 CATCTCGGCCGCGGTCTTGATGTAGTACCCGTCGCCGTCGAACTTGAACCGGTTCGGGTC 828 Query 40699 GTCGAGCGTGGTGCCGGTCTGGACGCAGAGTAGGGCATCGTGCGCCTTGCTCTCGT-CGG 40757 ||| | ||| | || | ||| ||||| || || || |||||||| | | ||||| | | Sbjct 827 GTCCATCGTCGATCCCGACTGCACGCACAGGAGCGCCTCGTGCGCGTCGGCCTCGTGCTG 768 Query 40758 CCGTGACGTAGTGGCTGTCGTTGGT---GACCACCGGGGTGAGCGCGAGGTGCTTGCCCA 40814 | | |||||| ||||||||| ||||| |||| || | |||| ||| | Sbjct 767 ATGCG-TGTAGTGCGAGTCGTTGGTGGCGACCAGCGGGATGTTC---AGGTCCTTCGAGA 712 Query 40815 GCCGGTAGAGGTCGTCGCGGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCA 40874 | ||| ||| ||| ||||||||||||||| ||| ||||||||||||||||| Sbjct 711 GACGGAGGAGATCGGTCATCACGCGCCGCTCGATCGACAGACCGTGGTCCATGATCTCGG 652 Query 40875 GGAAGTACCGGTCACGACCGAACACCTCCAGGTACCGGCCAGCCTCCGCAACGGCCTGGT 40934 |||||| || ||||||| ||| || || | | || |||| || || Sbjct 651 CGAAGTAGTTCTCCTTGCCGAACAGGTCCTGGAACTCGGCTGCGGCCGCGCGCGCAGCGT 592 Query 40935 CGTACTGCCCGAGGTTGAGCCGGGTCATGATCGCACCGCCAGGGCAGCCCGTGGTGACGA 40994 ||||||| ||||| || || ||| |||| | || ||||| || ||||| ||| Sbjct 591 CGTACTGTCCGAGACGCAGGCGCGTCTGGATCTCGCCTGACGGGCATCCGGTGGTCGCGA 532 Query 40995 TCAGGCCCTCGTTGT-GCTCGGCGACGAGGTCGAAGTCCATGCGCGGGTACTTCCCG-AG 41052 |||| || | | | | || || | || ||| |||||||||||| ||| | || Sbjct 531 TCAGTCCTTTGGAATAGGTCTGC-AGCAGCTCGCGGTCCATGCGCGG---CTTGAAGTAG 476 Query 41053 CAGGCCCTCTTGGTACGACCGAGAGCTGAGCTTCATGAGGTTGTGCAGGCCGGTCTTGTT 41112 | |||||| | |||||| ||||||||| | |||||||||| ||| || || Sbjct 475 TA-GCCCTCCATGCTCGACCGGGAGCTGAGCCGGAACAGGTTGTGCATGCC-CTC-GGTG 419 Query 41113 CTCGG---CGAGGATCGTGAGGTGGGTGTACGCACCGCGACCGCTCACGTCGTAACGCTT 41169 ||| | | | || || | |||||||||||||||| ||| ||||||| | ||| Sbjct 418 CTCTGACTCCA-CATGGTCATGTGGGTGTACGCACCGGAACCCGAGACGTCGTCGCTCTT 360 Query 41170 CTGGTCCTCGGTGCCCCACTGCACCCGC-TCCTG--ATCGAAGCGCGAGCCCGGAGCCAT 41226 ||| || | |||||||||||| ||| || || | | | ||| ||| |||| | Sbjct 359 CTGATCGGGCGAGCCCCACTGCACGCGCGTCTTGTCACTGCGGTGCGTGCCGGGAGTGAC 300 Query 41227 GTACGCCTCGATGCCGATGATCGGCTTGACCCCAGCGGCCGTAGCTGTGGTGAAGAAGTC 41286 || ||||||| ||||||||||||||||| || ||||| | || | || |||| || Sbjct 299 ATAGGCCTCGAGCCCGATGATCGGCTTGACACCCGCGGCATTGGCCGCCTTGTAGAACTC 240 Query 41287 GTGCGCACCGTGCAGGTTGCCGTGGTCGGTGACGGCGACTGCCGG 41331 | || || ||||||||| ||||| || |||| ||||| Sbjct 239 GAAAGCCGCGAAAGTGTTGCCGTGATCGGTCACCGCGATGGCCGG 195 >seq10553 Length=379 Score = 196 bits (216), Expect = 2e-45 Identities = 278/387 (72%), Gaps = 13/387 (3%) Strand=Plus/Plus Query 38873 AGTCCGAAGCGGATCTCGCTCTCCCCGTTCGGGGTGAAGGAGCTGTTCGAGACCGACACG 38932 || ||||||||||| ||| || ||| | | |||| || || ||||| | || || Sbjct 1 AGGCCGAAGCGGATGTCG---TCGCCGACGGCCGCGAAGAAGTTGATCGAGTCGGAGACA 57 Query 38933 TCGGGCGGCAGGACCCGCAGGCCCATGCGCCGCGCCTCGCCGAGGTACGTGGCCATCTTG 38992 |||||||| |||||| | ||||||||| || ||| ||||| ||||||||| Sbjct 58 TCGGGCGGAAGGACCTTGATGCCCATGCGGCGGCACTCATTCAGGTAAAGCGCCATCTTG 117 Query 38993 TTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTC 39052 | |||| |||||| || |||||||| ||||||||||||||||| |||||||||| | Sbjct 118 TCCTTGGAGTCGCCGACGCTGGTGAGCAGCGCCGCCATGTACTCGGCGGGGTAGTGCGCC 177 Query 39053 TTCAGGTACGCCGTGCGGTAGGCGATGAGCCCGTACGCCGCAGAGTGCGCCTTGTTGAAG 39112 || ||||| || || | || | || ||| ||||| || || ||||| || ||||||||| Sbjct 178 TTGAGGTATGCGGTCCAATACGAGACGAGACCGTATGCGGCGGAGTGGGCTTTGTTGAAG 237 Query 39113 GCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGC--GCTGTCCGAGT 39170 ||||| | | |||||| | || | |||||||| ||||| |||||| || |||| Sbjct 238 GCGTAGTCCGAGAAGGGCAGCAGGATGTCCCACAGCGCCTTGATGGCCGCCTCGCCGA-- 295 Query 39171 AGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGG--- 39227 | || |||||| | || | |||| || ||| |||| | || ||||| Sbjct 296 ATCCGCGCTCGGTCATACCGCCCGCGAAGCCTTCGTACTGCTTGTCGAG---CTCGGACT 352 Query 39228 GCTTCTTCTTGCCCATGGCCCGACGCA 39254 ||||||||||||||| || ||||||| Sbjct 353 TCTTCTTCTTGCCCATCGCTCGACGCA 379 >seq892 Length=133947 Score = 147 bits (162), Expect = 7e-31 Identities = 262/380 (69%), Gaps = 2/380 (1%) Strand=Plus/Minus Query 40035 AGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGGCCGA 40094 ||||| | || ||||||||| | |||| || | || |||||||| | | |||| Sbjct 124952 AGGGCATTTCGAGCACGCGGCCGACGTCGCGCAGCACGGCGCGCGCCTGCAGCGTTCCGA 124893 Query 40095 AGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGACCT 40154 |||| |||||| || |||| ||| || ||||| | || || |||||||||| Sbjct 124892 AGGTGATGATCTGCGCCACCTGATCGCGGCCATACTTGGCCTGAACATAGCGGATGACCT 124833 Query 40155 CGCCGCGACGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGT 40214 || |||| ||| | | |||||| ||||||| ||||||||| || ||||| ||||| | Sbjct 124832 CGTCGCGCCGCTCCTGACAGAAGTCAATGTCAAAGTCGGGCATCGAGACGCGGTCGGGAT 124773 Query 40215 TCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAG-G 40273 | ||||| || ||||| | || | ||| ||||||| |||||||||| || | Sbjct 124772 TGAGGAAGCGTTCGAACAGCAGGGAGAAGCGCAGCGGATCGACGTCGGTGATCGTCAGCG 124713 Query 40274 CAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTC 40333 || ||||| || |||||||| || | ||||| || || |||||||| | | | Sbjct 124712 CA-TAGGCAACGAGCGAACCCGCACCGGAGCCACGACCGGGACCGACAGGAATATCATGG 124654 Query 40334 TCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGG 40393 | || ||||| ||| ||||||| |||| |||||||| ||| | |||| || Sbjct 124653 GCTTTCGCCCATTTGATAAAGTCGGAAACGATGAGGAAGTAACCCGGATATTTCATCCGG 124594 Query 40394 ATGATCATGTCGATCTCGTA 40413 |||| ||| ||||| || Sbjct 124593 GTGATGATGGAAATCTCATA 124574 >seq3745 Length=368 Score = 84.2 bits (92), Expect = 7e-12 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 39184 CGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCAT 39243 ||| |||| ||||| || || | |||||||| | | ||| |||||||||||| Sbjct 365 CGCGCCCTCGCGGAAGATCTCGCGGTGCTTGGCCATTTCGGCCGGCACCTTCTTGCCCAT 306 Query 39244 GGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTT 39303 || || |||||||||||||| ||| || ||| || | | |||||||||| || Sbjct 305 CGCGCGGCGCAGCAGGTCGGCGCCGCCGAGCGAGTAACCGCCCACGATCTGCGCCATCTG 246 Query 39304 CTGCACCTGCTCCTGGTAGATGATGAGCCCGTACGTCGGGTCCAGGATC 39352 | ||||||||||||||| | |||| ||||| || | ||||||| Sbjct 245 CATCACCTGCTCCTGGTACACCATGATGCCGTAGGTGTCTTTCAGGATC 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160380909618468