Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_028832.1 Length=61511 Score E Sequences producing significant alignments: (Bits) Value seq10595 109 2e-19 seq4225 93.3 2e-14 >seq10595 Length=412 Score = 109 bits (120), Expect = 2e-19 Identities = 281/423 (66%), Gaps = 29/423 (7%) Strand=Plus/Minus Query 55005 TCGACCAGCTCGACCGCGTCTGGCTGTTCCTGCATTCCGGGTCTCGTGGTGTCGGCAACA 55064 |||| ||||||| || ||||||||||||||||| || || || || || |||||||||| Sbjct 404 TCGATGAGCTCGATCGGGTCTGGCTGTTCCTGCACTCGGGCTCGCGAGGCGTCGGCAACA 345 Query 55065 AGATCGCGCAGAAACACATCAAGGCCGCCCAGAACGCCT-GCGAGG-------GCATCGA 55116 ||||||| | | |||||| | ||||||| || || |||||| | ||||| Sbjct 344 AGATCGCCGGGCACCACATCGCCGTCGCCCAG--CGGCTGGCGAGGCAGTGGTGGATCGA 287 Query 55117 ACTGCCGTCCAAGGATCTGGCGTACCTCACCGAAGGCACACCCCAATTCTACGAGTACCT 55176 || || | || ||||| ||||| ||| |||||||| | ||| | ||| | Sbjct 286 CCTTCCCGACCCCGACCTGGCATACCTGGTCGAGGGCACACCGGAGTTCACCCGCTACAT 227 Query 55177 ACGTGAACTGCATTGGGCGCAACGATTCGCG-TACTCGAACCGCGCCGAAATGATGGACC 55235 || || |||| ||||| || | |||||| | || |||||| | || |||||||| | Sbjct 226 CCGGGAGCTGCGGTGGGCCCAGCACTTCGCGCTGCT-GAACCGGGAGGAGATGATGGATC 168 Query 55236 GGTTCGCGCGCGCA-TTCGCGAACTGGATCGGCACACCCGTCGACGACGTCTCAGCGTTC 55294 | || || ||| | || | | |||| || || |||||||| ||| Sbjct 167 GCGTCATCCG-GCAGGTGTCGGAGTTCCTCGGAACCCCGGTCGACGA----ACAG----- 118 Query 55295 ATCGCCGAAACCATCAACACCCACCACAACTACACCGAGCAGGAAGAACACGGCGGCCGG 55354 || ||||||| ||||||||||| ||||||| ||| | ||| ||| | Sbjct 117 ------GAGCGCATCAACTGCCACCACAACTTCACCGAGTCGGAGAAGCACTACGGGAAG 64 Query 55355 TTCGTGTGGCTCACCCGCAAAGGCGCCATCGACGCACACGAAGGTGTGCGTGGCCTCATC 55414 |||||| | | || || || |||||| | || ||| ||| | ||||||||| Sbjct 63 CAGGTGTGGGTGTCACGGAAGGGAGCCATCCAGGCGGACGCCGGTCGACCGGGCCTCATC 4 Query 55415 CCC 55417 ||| Sbjct 3 CCC 1 >seq4225 Length=585 Score = 93.3 bits (102), Expect = 2e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 54594 TGCCGTTCGTGTATCCGCACGTCGCACTCATGCCCGACGCACATTTCGGCAAAGGCAGCT 54653 |||||||||| ||| || || | ||||| |||| || | |||||||| | Sbjct 229 TGCCGTTCGTCGGCCCGTGGGTGGCGGTGATGCCGGACGTGCACGTAGGCAAAGGGGCCA 170 Query 54654 CGGTCGGCACAGTCATCCCCACCCAAGGCGCCGTCATCCCGGCCGCCGTCGGCGTCGACA 54713 | || ||| | || ||||| |||| ||||| |||| |||||||| |||||||| |||| Sbjct 169 CCGTGGGCTCGGTGATCCCTACCCGCGGCGCGATCATTCCGGCCGCGGTCGGCGTGGACA 110 Query 54714 TCGGCTGCGGCATGATCGCAGCCCGCACCAC 54744 |||||||||||||| || | |||||||| Sbjct 109 TCGGCTGCGGCATGGCGGCGGTGCGCACCAC 79 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 196682339995932