Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq5514 398 2e-106 seq2755 288 3e-73 seq10553 203 1e-47 seq3745 93.3 1e-14 >seq5514 Length=778 Score = 398 bits (440), Expect = 2e-106 Identities = 535/752 (71%), Gaps = 46/752 (6%) Strand=Plus/Plus Query 38215 ACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCC 38274 ||||||||||||||||||||||||||| ||| | |||||||||||||| |||||| || Sbjct 24 ACCTGCTCCTGGTAGATGATGAGCCCGTAGGACTCCTCCAGGATCTCGGCGAGCGGCGCC 83 Query 38275 TCCACCTCGGGGTGGATCGGCGTGATCTCCTGCTGACCGTTCTTGCGGAGGGCGTAGTTC 38334 |||| |||||||||||||||||||||||||||| ||||||||||| || || |||||| Sbjct 84 TCCAGCTCGGGGTGGATCGGCGTGATCTCCTGCACCCCGTTCTTGCGCAGCGCATAGTTC 143 Query 38335 GTGTGCGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCC 38394 ||||||||| ||||| |||||||| || ||||| |||| || |||||||||||| Sbjct 144 GTGTGCGAGTTGGCTCCCATGGGACCCGGCCGATACAGGGCGATGAGGGCCGAGATGTCA 203 Query 38395 TCGAACTGGTCCGGCTTCAGCAGGCGAAGCAGGGAGCGCATC------------------ 38436 |||| | ||| ||||||| ||| || | || Sbjct 204 CCGAAGTTGTCGGGCTTCATCAGACGCATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNN 263 Query 38437 ------------------GCGCCG--CCGTCGAGCTGGAAGACCGAGAGGGTGTCGCCCC 38476 ||| || | ||||||||||||||| ||||||||||| | Sbjct 264 NNNNNNNNNNNNNNNNAAGCGGCGGGCTGTCGAGCTGGAAGACGCCCAGGGTGTCGCCGC 323 Query 38477 TGGCCAGCAGCTCGTAGGTTGCCGGGTCGTCCAG--CGGGATGTTCTCGATGTCGACGTG 38534 || ||||||| ||| | |||||||| || || ||||| |||| ||||| | Sbjct 324 GCGCGAGCAGCTGGTACACGCCGGGGTCGTCGAGACCGAGATGT--TCGAGGTCGAGCTC 381 Query 38535 CTCACCACGGTTGCGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAG 38594 || |||||||| ||||||||| |||| ||| || |||||||||||||||||||| Sbjct 382 TTCGCCACGGTTCGTGCGGATGTTGTCGAGCGCATCCGAGATGATCGTGAGGTTCCGGAG 441 Query 38595 CCCGAGGAAGTCCATCTTCAGCAGGCCCAGGGCCTCGCAGCTCGGGTAGTCGAACTGCGT 38654 ||| |||||||||||||| | ||| || |||| |||||| |||||||||||||||||| Sbjct 442 CCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCACGACGGGTAGTCGAACTGCGT 501 Query 38655 GATCGTCACGCCGTCC-GCAGGCCGCACCCACG-TAGGGATGTGGTCGACCAGCGGCTCG 38712 || || ||| || || || | | || | | || ||| ||||| ||||| ||| Sbjct 502 GACGATCTGCCCGGCCTGCTCGCGG--CGCATGATCGGAATGATGTCGAGGAGCGGATCG 559 Query 38713 TCAGACATGATCACACCGGCTGCGTGCACGCCCATCTGCCGGACGAGTCCTTCGAGGCCA 38772 ||||||||||| ||||| |||||||||||| ||| || || |||||||| || Sbjct 560 GACGACATGATCACGCCGGCGGCGTGCACGCCCCACTGGCGCTTCAGCCCTTCGAGACCC 619 Query 38773 CGCGCGAGGTCGATGACCTCCTTCGCGTCCTTGTCGTTCTCGTACAGCGCCCGGATCTCG 38832 ||||| |||||| |||| |||||| || || ||||| ||| | || || |||| Sbjct 620 AGCGCGCGGTCGAAGACCGTCTTCGCCTCGGGATCCGTCTCGATCAGGGTCCTGAACTCG 679 Query 38833 CCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGGTGATGCCCTCCAGGGGCATCGACGCG 38892 | ||| || | ||| | |||||| | | || | ||||| || |||||||| | | Sbjct 680 CTCGCTTCCTTGTACCTCGGGTGAGCAGAGTCGAACATGCCGTCGAGGGGCATGTCCTTG 739 Query 38893 CCCATCACGTCGGCCGGGTACGCCTTGGTCAG 38924 ||||||||| | ||| ||||||||| || Sbjct 740 CCCATCACGGGCGGCGGCATCGCCTTGGTGAG 771 >seq2755 Length=1107 Score = 288 bits (318), Expect = 3e-73 Identities = 549/797 (69%), Gaps = 20/797 (3%) Strand=Plus/Minus Query 39546 CATCTCGGCGGCCGACTTCAGGTAGTACCCCTCGCCCTCGAACCGGAACCGATCCTCCTG 39605 ||||||||| || | ||| | ||||||||| ||||| |||||| |||||| | | | Sbjct 887 CATCTCGGCCGCGGTCTTGATGTAGTACCCGTCGCCGTCGAACTTGAACCGGTTCGGGTC 828 Query 39606 GTAGAGGGTCGAGCCGGTCTGGACGCACAGCAGGGCGTCGTGGGCCGCAGCCTCCTCGAC 39665 || | ||||| || | ||| |||||||| || || ||||| || | ||||| | Sbjct 827 GTCCATCGTCGATCCCGACTGCACGCACAGGAGCGCCTCGTGCGCGTCGGCCTCGTGCTG 768 Query 39666 CCGCGTGTAGTGCGAGTCGTTGGTGACCACCGGGGTGAGACCGAGGCGCTGACCGAGGCG 39725 ||||||||||||||||||||||| | ||| | | || ||| || ||| || Sbjct 767 ATGCGTGTAGTGCGAGTCGTTGGTGGCGACCAGCGGGATGTTCAGGTCCTTCGAGAGACG 708 Query 39726 GTAGAGGTCGTCGCGGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAA 39785 | ||| ||| ||||||||||||||| ||| ||||||||||||||||| ||| Sbjct 707 GAGGAGATCGGTCATCACGCGCCGCTCGATCGACAGACCGTGGTCCATGATCTCGGCGAA 648 Query 39786 GAAGTTGTCCTTCCCGAAGATCTCCCGCCACTTCGCGGCCTCGGCGACGGCCTCCTCGTA 39845 | |||| ||||| ||||| | ||| | ||| || || | ||| || | ||||| Sbjct 647 GTAGTTCTCCTTGCCGAACAGGTCCTGGAACTCGGCTGCGGCCGCGCGCGCAGCGTCGTA 588 Query 39846 CTGGCCGAGGTTGAGCCGGGTCATCACTGCGCCACCGGGGCATCCCGTGGTGCCGATCAG 39905 ||| ||||| || || ||| | |||| |||||||| ||||| ||||||| Sbjct 587 CTGTCCGAGACGCAGGCGCGTCTGGATCTCGCCTGACGGGCATCCGGTGGTCGCGATCAG 528 Query 39906 GCCCTCTGCGT-GCTCCGCCACCAGCTCGGCGTCCATGCGCGGGTACTTCCCG-AGCAGG 39963 || | | | | || | || ||||||| |||||||||||| ||| | || | | Sbjct 527 TCCTTTGGAATAGGTCTG-CAGCAGCTCGCGGTCCATGCGCGG---CTTGAAGTAGTA-G 473 Query 39964 CCCTCGCTGTACGAGCGAGAGGAGAGCTTGAACAGGTTGTGCAGGCCGGTCTTGTTCGTG 40023 ||||| || ||| || ||| |||| |||||||||||||| ||| || || || Sbjct 472 CCCTCCATGCTCGACCGGGAGCTGAGCCGGAACAGGTTGTGCATGCCCTCGGTGCTC-TG 414 Query 40024 GC-GAGCATGGTCATGTGGGTGTAGGCACCCCGACCGCTCACGTCGTACCGCTTCTGCTC 40082 | |||||||||||||||||| ||||| ||| ||||||| | |||||| || Sbjct 413 ACTCCACATGGTCATGTGGGTGTACGCACCGGAACCCGAGACGTCGTCGCTCTTCTGATC 354 Query 40083 GGGCGTGCCCCACTGGACCCGCTCCTGGTCGGAACGGTGC---CCCGGTGCGACGTACGC 40139 ||||| ||||||||| || ||| || ||| |||||| || || | ||| || || Sbjct 353 GGGCGAGCCCCACTGCACGCGCGTCTTGTCACTGCGGTGCGTGCCGGGAGTGACATAGGC 294 Query 40140 CTCGATCCCGATGATGGGCTTGACCCCAGCGGCCTGCCCCTGCGTGAAGAAGTCGTACGC 40199 ||||| ||||||||| |||||||| || ||||| | || | || |||| ||| | || Sbjct 293 CTCGAGCCCGATGATCGGCTTGACACCCGCGGCATTGGCCGCCTTGTAGAACTCGAAAGC 234 Query 40200 ACCATGCAGGTTGCCGTGGTCGGTCATCGCGAGGGCTCTCATGCCCTG----CGCCTTGG 40255 | ||||||||| ||||||| ||||| ||| ||| | || || | || Sbjct 233 CGCGAAAGTGTTGCCGTGATCGGTCACCGCGATGGCCGGCAT--CTTGTAGTCGGC--GG 178 Query 40256 CCTCGGCGAACATGTCCTTCAGCCGAGCCGCCCCGTCGAGCAGGCTGTACTCGGAGTGGA 40315 || | | ||| | || | | ||||| |||||||||| ||||||| ||| | Sbjct 177 CCGCCTGGGTCATCGCGTTGATCTTCGCCGCTCCGTCGAGCATCGAGTACTCGCTGTGCA 118 Query 40316 CATGCAGGTGAACGAAG 40332 | |||||||| |||||| Sbjct 117 CGTGCAGGTGGACGAAG 101 >seq10553 Length=379 Score = 203 bits (224), Expect = 1e-47 Identities = 276/383 (72%), Gaps = 9/383 (2%) Strand=Plus/Plus Query 37780 AGCCCGAAGCGGATCTCCCGCTCCCCGTTCGGGGTGAAGGAGGAGTTCGAGACCGACACG 37839 || ||||||||||| || || ||| | | |||| || | ||||| | || || Sbjct 1 AGGCCGAAGCGGATGTCG---TCGCCGACGGCCGCGAAGAAGTTGATCGAGTCGGAGACA 57 Query 37840 TCGGGCGGCAGGACCCGAAGGCCCATGCGCCTGCACTCGCCGAGGTACGTGGCCATCTTG 37899 |||||||| |||||| | ||||||||| | |||||| ||||| ||||||||| Sbjct 58 TCGGGCGGAAGGACCTTGATGCCCATGCGGCGGCACTCATTCAGGTAAAGCGCCATCTTG 117 Query 37900 TTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTC 37959 | |||| |||||| || |||||||| ||||||||||||||||| |||||||||| | Sbjct 118 TCCTTGGAGTCGCCGACGCTGGTGAGCAGCGCCGCCATGTACTCGGCGGGGTAGTGCGCC 177 Query 37960 TTCAGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAG 38019 || ||||| || || | || | || ||| ||||| || || ||||| || ||||||||| Sbjct 178 TTGAGGTATGCGGTCCAATACGAGACGAGACCGTATGCGGCGGAGTGGGCTTTGTTGAAG 237 Query 38020 GCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCCGGATGGCAGCCTCCGAGTAG 38079 ||||| | | |||||| | || | |||||||| |||| |||||| ||||| | | Sbjct 238 GCGTAGTCCGAGAAGGGCAGCAGGATGTCCCACAGCGCCTTGATGGCCGCCTCGCCGAAT 297 Query 38080 CCTCGCTCGCTCGCCCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGG---GC 38136 || |||||| || || | |||| || ||| |||| | || ||||| | Sbjct 298 CCGCGCTCGGTCATACCGCCCGCGAAGCCTTCGTACTGCTTGTCGAG---CTCGGACTTC 354 Query 38137 TTCTTCTTGCCCATGGCGCGACG 38159 |||||||||||||| || ||||| Sbjct 355 TTCTTCTTGCCCATCGCTCGACG 377 >seq3745 Length=368 Score = 93.3 bits (102), Expect = 1e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 38091 CGCCCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCAT 38150 ||| |||| ||||| || || | |||||||| | | ||| |||||||||||| Sbjct 365 CGCGCCCTCGCGGAAGATCTCGCGGTGCTTGGCCATTTCGGCCGGCACCTTCTTGCCCAT 306 Query 38151 GGCGCGACGGAGGAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTT 38210 ||||| || || |||||||| ||||| | ||| ||| ||| |||||||||| || Sbjct 305 CGCGCGGCGCAGCAGGTCGGCGCCGCCGAGCGAGTAACCGCCCACGATCTGCGCCATCTG 246 Query 38211 CTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATC 38259 | ||||||||||||||| | |||| ||| |||| | ||||||| Sbjct 245 CATCACCTGCTCCTGGTACACCATGATGCCGTAGGTGTCTTTCAGGATC 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159689819457924