Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq3006 138 2e-28 seq12163 113 9e-21 seq3418 86.0 1e-12 >seq3006 Length=629 Score = 138 bits (152), Expect = 2e-28 Identities = 193/266 (73%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 5817 TGCGCCTCAGCCATCGTGTCGGCCAGCACCTGCGCGGTGCGGGTGTAGTTTTCAAAGAGG 5876 |||||||| || || ||||||||||| | |||||| ||||||||| || | || ||| Sbjct 268 TGCGCCTCGGCGATGGTGTCGGCCAGGATCTGCGCCGTGCGGGTGGAGGTCTCGAAGGCA 209 Query 5877 AACAGCGGGTCATCAGAGCAGGTACGGTTACCCCAGAATCGGAAACCGTCGCGGCGAATC 5936 |||||||| ||||| |||||| || |||||||| | | |||| | | ||| Sbjct 208 AACAGCGGCTCATCGCTGCAGGTGCGCGATCCCCAGAACTTGTACCCGTTGGAGTTGATC 149 Query 5937 AGCGTAGTGACGCCTGACTCGTTAAGCAGGTCAGCATCGGT-GCCGGACTCCTGCAAATC 5995 ||||| |||| | | | || |||| | | || ||||| |||||| ||||||| || Sbjct 148 AGCGTGGTGATATCGGCGGCATTGAGCATGCCGGCGTCGGTCGCCGGA-TCCTGCAGGTC 90 Query 5996 CCAGAATACAGATGC--GCTGATGCCGGTAACACCGTTTACCCCGACGTTGGACAGCGTT 6053 || ||| | | | |||||||||||| || ||| ||| | ||||||||||||| Sbjct 89 CC--AATGGACGTCCCGGCTGATGCCGGTCACGCCGGCTACGGCCACGTTGGACAGCGAC 32 Query 6054 TTATGCCAGCCCTGCTCCTGGTCGAT 6079 ||||||||||| |||| || ||||| Sbjct 31 TTATGCCAGCCTTGCTGCTCATCGAT 6 >seq12163 Length=619 Score = 113 bits (124), Expect = 9e-21 Identities = 204/291 (70%), Gaps = 7/291 (2%) Strand=Plus/Minus Query 20442 ACAGCGCCGACGATTTTAAAAACCTGTTCATGTGTGAATTTGTTGACGACAAGGCGTCGG 20501 |||||||||| || || |||||| | ||||| || || || ||||||| || | Sbjct 295 ACAGCGCCGAGGAATTCGCCAACCTGCTGATGTGCGAGTTCGTGGACGACAGCGCCAGCG 236 Query 20502 TGTTCCCGTTCGAGGA-GCTGCAACGTTGCATGGTCGACACGCTGGAAGAA-TGGGAAGA 20559 |||||||| | || || |||||| | ||| ||| |||| ||||| | | |||| | Sbjct 235 TGTTCCCGCT-GACGATGCTGCAGCCGTGCCAGGTGGACA-GCTGGGTGGAGTGGGCCGG 178 Query 20560 CTA--TGCGCCGTTT-GCCGCAAATCCGTTCGGCTCCCGCCCGGTATGGATTGGTTACGA 20616 | | | ||| || ||| || | ||| |||| |||| |||||||| ||||| Sbjct 177 CGAGTTCAGCCCCTTCGCCATGCGCCCATATGGCGACCGCGCGGTGTGGATTGGGTACGA 118 Query 20617 CCCGTCACACCGTGGCGACAGCGCCGGATGCGTGGTACTGGCACCGCCGGTGGTGGCCGG 20676 |||| | | |||||||||||||| |||| | |||| ||||| ||| |||| Sbjct 117 CCCGGCCGAGACGGGCGACAGCGCCGGCATCGTGATTGTGGCGCCGCCCCAAGTGCCCGG 58 Query 20677 TGGCAAATTCAGAATACTTGAGCGTCACCAGTGGAAAGGCATGGACTTTGC 20727 |||||| ||| | | || ||||||||||||| || ||||||||||| || Sbjct 57 TGGCAAGTTCCGCGTGCTGGAGCGTCACCAGTTCAAGGGCATGGACTTCGC 7 >seq3418 Length=506 Score = 86.0 bits (94), Expect = 1e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 21619 GTGTTTCACCTGCTGGAGCCGGATATCAATCAGGAGCTGTACGGCCTGCCGGAATATCTC 21678 |||| || |||| |||| | ||| | |||||| ||||||||||||| || | | Sbjct 99 GTGTACCAGCTGCGGGAGTCCGATGCAGACCAGGAGGTGTACGGCCTGCCCGAGTGGATG 158 Query 21679 AGCGCCCTTAACTCTGCCTGGCTGAATGAGTCGGCCACGCTGTTCCGCCGCAAGTATTAC 21738 ||| | | | || ||| || |||||||||||||||||||| |||||||| ||| Sbjct 159 CCGGCCGTGCAGGCCGCGCTGCTCAACGAGTCGGCCACGCTGTTCCGGCGCAAGTACTAC 218 Query 21739 GAAAACGGCGCTCATGCCGGATACATCATGTATGTCACCGATGCC 21783 | |||||| | || ||||| | |||| | || | |||||| || Sbjct 219 AACAACGGCTCGCACGCCGGCTTCATCCTCTACCTGACCGATTCC 263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104421803563308