Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq132 212 3e-50 seq9105 181 5e-41 seq8692 165 4e-36 seq964 150 9e-32 >seq132 Length=332281 Score = 212 bits (234), Expect = 3e-50 Identities = 420/619 (68%), Gaps = 7/619 (1%) Strand=Plus/Minus Query 66497 GCCCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCT 66556 ||||| ||| | || || |||| ||||| | || || || ||||| || ||| Sbjct 246311 GCCCTTGGCGTTGGCGGTCTGCCGAAAGGCCGCATTGTCGAGATTTACGGGCCGGAAAGC 246252 Query 66557 TCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAAC 66616 || || ||| |||| ||| || || || | || | || |||||| || |||| | Sbjct 246251 TCGGGTAAGACAACCCTGGCGCTGCATACGATTGCGGAAGCCCAGAAGAAGGGCGGCATC 246192 Query 66617 GCCGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTG 66676 ||||| | ||||||| || || | |||||||| | || ||| ||| || ||| Sbjct 246191 TGCGCCTTCGTCGACGCGGAACATGCGCTGGACCCGGTCTATGCCCGCAAGCTGGGCGTG 246132 Query 66677 GACCTCGACAACCTCGTGGTGGTTCAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTT 66736 || || || || || || | ||||||||||| ||||||||||| ||||||||| Sbjct 246131 GATCTGGAGAATCTGCTGATCTCGCAGCCCGATACGGGCGAGCAGGCGCTGGAGATCACC 246072 Query 66737 GACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTC--GTCGTTGACTCCGTGGCGGCCC 66794 ||| || || || | | || || || || || || || ||||| || || Sbjct 246071 GACACGCTGGTGCGTTCCG--GTGCGATCGATGTTCTGGTGGTCGATTCCGTTGCCGCTT 246014 Query 66795 TGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGC 66854 || ||||| || || |||||||||| || || || || | ||||||||| || | Sbjct 246013 TGACCCCGCGTGCGGAAATCGAAGGCGAGATGGGCGATTCTCTCCCCGGCCTGCAGGCCC 245954 Query 66855 GCCTCATGTCACAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCAACACGCTGA 66914 |||| ||| ||||| |||||||||| || | |||| ||| | ||||| || Sbjct 245953 GCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGCATCCATTTCCCGTTCCAACTGCATGG 245894 Query 66915 CGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGA 66974 | | |||||||| | ||| ||||||||| |||| | ||| || ||| | Sbjct 245893 TCATTTTCATCAACCAGATCCGCATGAAGATCGG---CGTGATGTTCGGTTCGCCTGAAA 245837 Query 66975 CCACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGTATGGATGTCCGTCGCA 67034 |||| |||||||| || || ||| ||||| || || || ||| | ||| |||| |||| Sbjct 245836 CCACGACGGGCGGCAATGCGCTGAAATTCTATGCTTCGGTGCGTCTCGATATCCGCCGCA 245777 Query 67035 TCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCA 67094 ||| | ||||||| | || |||| |||||||||| ||||| || ||||| |||| Sbjct 245776 TCGGTGCGCTGAAGGAACGTGACGAGGTGGTCGGCAACCAGACCCGCGTCAAGGTGGTCA 245717 Query 67095 AGAACAAGCTGGCCCCGCC 67113 |||||||||| || || || Sbjct 245716 AGAACAAGCTTGCGCCCCC 245698 >seq9105 Length=354 Score = 181 bits (200), Expect = 5e-41 Identities = 192/250 (77%), Gaps = 5/250 (2%) Strand=Plus/Minus Query 66768 TCGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCG 66827 || ||||| |||||||||||||||| || ||||| ||||||||| |||| ||||| || | Sbjct 246 TCATCGTCATTGACTCCGTGGCGGCGCTCGTGCCCCGCGCCGAGATCGAGGGCGAGATGG 187 Query 66828 GGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCAAGCTCACTG 66887 | ||| |||||||| ||||| ||||| |||||||| ||||| |||| |||||||| | Sbjct 186 GCGACTCGCACGTCGGTCTGCAGGCGCGACTCATGTCGCAGGCGCTGCGTAAGCTCACCG 127 Query 66888 G-CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATC 66946 | || |||| ||||||||| || | ||| |||||||| | |||||||||||| Sbjct 126 GTGGCCTGAACCAG-ACCAACACGACGATGATCTTCATCAACCAGCTTCGCGAGAAGATC 68 Query 66947 GGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTCTAC 67006 || ||| || |||| || ||||| ||| | || || ||||| ||| ||||||| Sbjct 67 GG---CGTCTTCTTCGGCTCGCCCGAGACGACCGCCGGTGGTAAGGCGCTGAAGTTCTAC 11 Query 67007 GCCTCAGTCC 67016 ||||| |||| Sbjct 10 GCCTCGGTCC 1 >seq8692 Length=1388 Score = 165 bits (182), Expect = 4e-36 Identities = 297/425 (70%), Gaps = 8/425 (2%) Strand=Plus/Plus Query 66458 GTGGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGG-TA 66516 || || ||||| |||||||| || | ||||| ||| || ||||| || || | Sbjct 968 GTCGAGGTCATCCCCACCGGTTCGCTGATGCTGGATATCGCACTCGGCATTGGTGGACTG 1027 Query 66517 CCCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTG 66576 ||| |||||| | || || ||||||||||| || ||||| || || ||| | || ||| Sbjct 1028 CCCAAGGGGC-GTGTCGTTGAAATCTACGGTCCGGAATCCTCGGGCAAGACCACCCTGAC 1086 Query 66577 TCTCCACGCGGTGGCC-AATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTG 66635 || || || | ||| ||||| |||||| || |||| ||| |||| ||||||||| | Sbjct 1087 CCTGCAGGCCATTGCCGAATGC-CAGAAGAAGGGCGGCACCGCTGCCTTCATCGACGCCG 1145 Query 66636 AGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGG 66695 |||| | |||||||| |||||| ||| || ||| || | ||| |||| || Sbjct 1146 AGCATGCACTGGACCCGATCTACGCCGCCAAGCTGGGCGTGAACGTGGACGACCTGCTGC 1205 Query 66696 TGGTTCAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTG 66755 || |||||||||||||| |||||||| ||||| |||| ||| | || || ||| Sbjct 1206 TGTCGCAGCCCGATACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGGTCCA 1265 Query 66756 GCGAGCTGTCCATCGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCG 66815 || | || ||| || || || ||||| || || || ||| || ||||| ||| Sbjct 1266 GCTCGGTGGACATTGTGGTGGTCGACTCGGTCGCCGCGCTGACCCCCAAGGCCGAAATCG 1325 Query 66816 AAGGCGACATCGGGGA-CAG-TCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCAT 66873 ||||||| || || || ||| | || |||||||| || || || ||| ||||| | Sbjct 1326 AAGGCGAAATGGGCGACCAGCTGCCG--GGCCTGCAGGCCCGTCTGATGAGCCAGGCGCT 1383 Query 66874 GCGCA 66878 ||||| Sbjct 1384 GCGCA 1388 >seq964 Length=324 Score = 150 bits (166), Expect = 9e-32 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 66997 GAGGTTCTACGCCTCAGTCCGTATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGA 67056 || |||||||||||| ||||| ||||| ||||||| |||| ||| ||||| || Sbjct 1 GAAGTTCTACGCCTCGGTCCGCATGGACATCCGTCGTATCGAGACCCTCAAGGACGGAAC 60 Query 67057 TGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCA 67116 || || ||||| ||||||||| |||| ||||| |||||||||||| |||| |||||| Sbjct 61 CGACGCCGTCGGAAACCGCACCAGGGTCAAGGTGGTCAAGAACAAGATGGCGCCGCCGTT 120 Query 67117 CCGCAATGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCT 67176 | | ||||||||| | || | ||||| | |||||||| ||||||| | || | Sbjct 121 CAAGCAGGCCGAGTTCGACATCCTCTACGGCGTCGGCATCTCCCGTGAGGGCAGCCTGAT 180 Query 67177 CGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACG 67232 |||| | | ||| ||| | | | ||||||||||||||| | |||| || |||| Sbjct 181 CGACTTCGGCGTCGAGCACGCCATCGTGAAGAAGTCGGGCTCGTGGTACACCTACG 236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242821191073188