Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq3006 129 1e-25 seq12163 113 8e-21 seq3418 86.0 1e-12 >seq3006 Length=629 Score = 129 bits (142), Expect = 1e-25 Identities = 191/266 (72%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 23160 ATCGACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAACGTCGGGGTAAACGGTGTTACC 23219 ||||| || |||| ||||||||||| ||||||||||||| | ||| ||| || ||| Sbjct 6 ATCGATGAGCAGCAAGGCTGGCATAAGTCGCTGTCCAACGTGGCCGTAGCCGGCGTGACC 65 Query 23220 GGCATCAGC--GCATCTGTATTCTGGGATTTGCAGGAGTCCGGC-ACCGATGCTGACCTG 23276 ||||||||| | | | ||| |||| ||||||| |||||| ||||| || | | || Sbjct 66 GGCATCAGCCGGGACGTCCATT--GGGACCTGCAGGA-TCCGGCGACCGACGCCGGCATG 122 Query 23277 CTGAACGAGTCAGGCGTCACAACGCTGATTCGTCGTGACGGTTTCCGCTTCTGGGGTAAC 23336 || || | | | |||| |||||||| |||| | | |||||||| Sbjct 123 CTCAATGCCGCCGATATCACCACGCTGATCAACTCCAACGGGTACAAGTTCTGGGGATCG 182 Query 23337 CGTACCTGCTCTGATGACCCGCTGTTCCTCTTTGAAAACTACACCCGCACCGCGCAGGTG 23396 || |||||| ||||| |||||||| ||| || | || ||||||||| |||||| | Sbjct 183 CGCACCTGCAGCGATGAGCCGCTGTTTGCCTTCGAGACCTCCACCCGCACGGCGCAGATC 242 Query 23397 CTGGCCGACACGATGGCTGAGGCGCA 23422 ||||||||||| || || |||||||| Sbjct 243 CTGGCCGACACCATCGCCGAGGCGCA 268 >seq12163 Length=619 Score = 113 bits (124), Expect = 8e-21 Identities = 204/291 (70%), Gaps = 7/291 (2%) Strand=Plus/Plus Query 8767 GCAAAGTCCATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACC 8826 || ||||||||||| || ||||||||||||| || | | ||| |||||||||| ||| Sbjct 7 GCGAAGTCCATGCCCTTGAACTGGTGACGCTCCAGCACGCGGAACTTGCCACCGGGCACT 66 Query 8827 ACCGGCGGTGCCAGCACCACGCATCCGGCACTGTCGCCACGGTGTGACGGGTCGTAACCA 8886 ||||| |||| | |||| ||||| |||||||| | | ||||||||| ||| Sbjct 67 TGGGGCGGCGCCACAATCACGATGCCGGCGCTGTCGCCCGTCTCGGCCGGGTCGTACCCA 126 Query 8887 ATCCAGACCGGGCGGGAGCCGAACGGATTCGCGGC-AAACGGCGCA--TAGTCTTCCCA- 8942 ||||| |||| |||| ||| | || | ||| || ||| | | | | |||| Sbjct 127 ATCCACACCGCGCGGTCGCCATATGGGCGCATGGCGAAGGGGCTGAACTCGCCGGCCCAC 186 Query 8943 TTCTTCCAGCGTGTCGACCATGCAGCGTTGCAGC-TCCTCGAACGGGAACACCGACGCCT 9001 | | ||||| |||| ||| ||| | |||||| || || | ||||||||| || Sbjct 187 TCCACCCAGC-TGTCCACCTGGCACGGCTGCAGCATCGTC-AGCGGGAACACGCTGGCGC 244 Query 9002 TGTCGTCAACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGT 9052 ||||||| || || || ||||| | |||||| || || |||||||||| Sbjct 245 TGTCGTCCACGAACTCGCACATCAGCAGGTTGGCGAATTCCTCGGCGCTGT 295 >seq3418 Length=506 Score = 86.0 bits (94), Expect = 1e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 7711 GGCATCGGTGACGTACATGATATATCCGGCATGAGCGCCGTTTTCGTAATACTTGCGGCG 7770 || |||||| | ||| | ||| | ||||| || | |||||| | ||| |||||||| || Sbjct 263 GGAATCGGTCAGGTAGAGGATGAAGCCGGCGTGCGAGCCGTTGTTGTAGTACTTGCGCCG 204 Query 7771 GAACAGCGTGGCCGACTCATTCAGCCAGGCAGAATTAAGGGCGCTGAGATATTCCGGCAG 7830 |||||||||||||||||| || ||| || | | | ||| | | || ||||| Sbjct 203 GAACAGCGTGGCCGACTCGTTGAGCAGCGCGGCCTGCACGGCCGGCATCCACTCGGGCAG 144 Query 7831 GCCGTACAGCTCCTGATTAATATCCGGCTCCAGCAGGTGAAACAC 7875 |||||||| |||||| | ||| | |||| |||| || |||| Sbjct 143 GCCGTACACCTCCTGGTCTGCATCGGACTCCCGCAGCTGGTACAC 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93421951841316