Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq5514 374 3e-99 seq2755 286 1e-72 seq10553 194 5e-45 seq892 111 5e-20 seq3745 91.5 5e-14 >seq5514 Length=778 Score = 374 bits (414), Expect = 3e-99 Identities = 532/753 (71%), Gaps = 48/753 (6%) Strand=Plus/Plus Query 38648 ACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCC 38707 ||||||||||||||||||||||||||| ||| | |||||||||||||| |||||| || Sbjct 24 ACCTGCTCCTGGTAGATGATGAGCCCGTAGGACTCCTCCAGGATCTCGGCGAGCGGCGCC 83 Query 38708 TCCACCTCGGGGTGGATCGGCGTGATCTCCTGCTGCCCGTTCTTGCGGAGGGCGTAGTTC 38767 |||| |||||||||||||||||||||||||||| |||||||||||| || || |||||| Sbjct 84 TCCAGCTCGGGGTGGATCGGCGTGATCTCCTGCACCCCGTTCTTGCGCAGCGCATAGTTC 143 Query 38768 GTGTGCGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCCACGACGGCGGAGATGTCC 38827 ||||||||| ||||| |||||||| || ||||| || | || ||| |||||||| Sbjct 144 GTGTGCGAGTTGGCTCCCATGGGACCCGGCCGATACAGGGCGATGAGGGCCGAGATGTCA 203 Query 38828 TCGAACTGGTCCGGCTTCAGCAGGCGGAGCAGGGAGCGCATC------------------ 38869 |||| | ||| ||||||| ||| || | || Sbjct 204 CCGAAGTTGTCGGGCTTCATCAGACGCATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNN 263 Query 38870 ------------------GCGCCG--CCGTCGAGCTGGAACACCGAGAGCGTGTCGCCCC 38909 ||| || | |||||||||||| || || |||||||| | Sbjct 264 NNNNNNNNNNNNNNNNAAGCGGCGGGCTGTCGAGCTGGAAGACGCCCAGGGTGTCGCCGC 323 Query 38910 TGGCCAGCAGCTCGTACGTCGCGGGGTCATCCAG--CGGGATGTTCTCGATGTCGACGTG 38967 || ||||||| |||| ||||||| || || || ||||| |||| ||||| | Sbjct 324 GCGCGAGCAGCTGGTACACGCCGGGGTCGTCGAGACCGAGATGT--TCGAGGTCGAGCTC 381 Query 38968 CTCACCACGGTTGCGGCGGATGTTCTCGACCGCGTCGCCCATGATCGTGAGGTTCCGGAG 39027 || |||||||| ||||||||| |||| ||| || |||||||||||||||||||| Sbjct 382 TTCGCCACGGTTCGTGCGGATGTTGTCGAGCGCATCCGAGATGATCGTGAGGTTCCGGAG 441 Query 39028 CCCGAGGAAGTCCATCTTCAGCAGGCCCAGAGCCTCGCAGCTCGGGTAGTCGAACTGCGT 39087 ||| |||||||||||||| | ||| || || | |||||| |||||||||||||||||| Sbjct 442 CCCCAGGAAGTCCATCTTGATCAGACCGAGGGACTCGCACGACGGGTAGTCGAACTGCGT 501 Query 39088 GATCGTTACGCCGTCCGCAGGC-CGC-ACCCACG-TCGGGATGTGATCGACCAGCGGCTC 39144 || || | ||| | || || ||| | || | |||| ||| |||| ||||| || Sbjct 502 GA-CGATCTGCC--CGGCCTGCTCGCGGCGCATGATCGGAATGATGTCGAGGAGCGGATC 558 Query 39145 GTCGGACATGATCACACCGGCTGCGTGCACGCCCATCTGCCGGACGAGACCTTCGAGGCC 39204 | ||||||||||| ||||| |||||||||||| ||| || || |||||||| || Sbjct 559 GGACGACATGATCACGCCGGCGGCGTGCACGCCCCACTGGCGCTTCAGCCCTTCGAGACC 618 Query 39205 ACGCGCGAGGTCAATGACCTCCTTCGCGTCCTTGTCGTTCTCGTACAGCGCCCGGATCTC 39264 ||||| |||| | |||| |||||| || || ||||| ||| | || || ||| Sbjct 619 CAGCGCGCGGTCGAAGACCGTCTTCGCCTCGGGATCCGTCTCGATCAGGGTCCTGAACTC 678 Query 39265 GCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGGTGATGCCCTCCAGGGGCATCGACGC 39324 || ||| || | ||| | |||||| | | || | ||||| || |||||||| | Sbjct 679 GCTCGCTTCCTTGTACCTCGGGTGAGCAGAGTCGAACATGCCGTCGAGGGGCATGTCCTT 738 Query 39325 GCCCATCACATCGGCCGGGTACGCCTTGGTCAG 39357 ||||||||| | ||| ||||||||| || Sbjct 739 GCCCATCACGGGCGGCGGCATCGCCTTGGTGAG 771 >seq2755 Length=1107 Score = 286 bits (316), Expect = 1e-72 Identities = 552/800 (69%), Gaps = 26/800 (3%) Strand=Plus/Minus Query 39979 CATCTCGGCGGCCGACTTCAGGTAGTACCCTTCGCCCTCGAACCGGAAGCGATCCTCCTG 40038 ||||||||| || | ||| | ||||||||| ||||| |||||| ||| || | | | Sbjct 887 CATCTCGGCCGCGGTCTTGATGTAGTACCCGTCGCCGTCGAACTTGAACCGGTTCGGGTC 828 Query 40039 GTAGAGGGACGAGCCGGTCTGGACGCACAGCAGGGCGTCGTGGGCCGCAGCCTCCTCGAC 40098 || | | ||| || | ||| |||||||| || || ||||| || | ||||| | Sbjct 827 GTCCATCGTCGATCCCGACTGCACGCACAGGAGCGCCTCGTGCGCGTCGGCCTCGTGCTG 768 Query 40099 CCGCGTGTAGTGCGAGTCGTTGGTGACCACCGGGGTGAGACCGAGGCGCTGACCGAGGCG 40158 ||||||||||||||||||||||| | ||| | | || ||| || ||| || Sbjct 767 ATGCGTGTAGTGCGAGTCGTTGGTGGCGACCAGCGGGATGTTCAGGTCCTTCGAGAGACG 708 Query 40159 GTAGAGGTCGTCGCGGACGCGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAA 40218 | ||| ||| ||||||||||||||| ||| ||||||||||||||||| ||| Sbjct 707 GAGGAGATCGGTCATCACGCGCCGCTCGATCGACAGACCGTGGTCCATGATCTCGGCGAA 648 Query 40219 GAAGTTGTCCTTCCCGAAGATCTCCCGCCACTTCGCAGCCTCGGCGACGGCCTCCTCGTA 40278 | |||| ||||| ||||| | ||| | ||| || || | ||| || | ||||| Sbjct 647 GTAGTTCTCCTTGCCGAACAGGTCCTGGAACTCGGCTGCGGCCGCGCGCGCAGCGTCGTA 588 Query 40279 CTGACCGAGGTTGAGCCGGGTC---ATCACAGCACCACCGGGGCATCCCGTGGTGCCGAT 40335 ||| ||||| || || ||| ||| | || || |||||||| ||||| |||| Sbjct 587 CTGTCCGAGACGCAGGCGCGTCTGGATCTC-GCCTGAC--GGGCATCCGGTGGTCGCGAT 531 Query 40336 CAGGCCCTCTGCGT-GCTCGGCCACCAGCTCGGCGTCCATGCGCGGGTACTTCCCG-AGC 40393 ||| || | | | | || | || ||||||| |||||||||||| ||| | || Sbjct 530 CAGTCCTTTGGAATAGGTCTG-CAGCAGCTCGCGGTCCATGCGCGG---CTTGAAGTAGT 475 Query 40394 AGACCCTCGCTGTACGAGCGAGAGGAGAGCTTGAACAGGTTGTGCAGGCCGGTCTTGTTC 40453 || ||||| || ||| || ||| |||| |||||||||||||| ||| || || Sbjct 474 AG-CCCTCCATGCTCGACCGGGAGCTGAGCCGGAACAGGTTGTGCATGCCCTCGGTGCTC 416 Query 40454 -GTCGCGAGCATGGTCATGTGGGTGTAGGCACCCCGACCGCTCACGTCGTACCGCTTCTG 40512 | | | | |||||||||||||||||| ||||| ||| ||||||| | |||||| Sbjct 415 TGACTCCA-CATGGTCATGTGGGTGTACGCACCGGAACCCGAGACGTCGTCGCTCTTCTG 357 Query 40513 CTCGGGCGTGCCCCACTGGACCCGCTCCTGGTC---GGAGCGCGAGCCCGGCGCGACGTA 40569 ||||||| ||||||||| || ||| || ||| | | ||| ||| || | ||| || Sbjct 356 ATCGGGCGAGCCCCACTGCACGCGCGTCTTGTCACTGCGGTGCGTGCCGGGAGTGACATA 297 Query 40570 CGCCTCGATCCCGATGATGGGCTTGACCCCAGCGGCCTGCCCCTGCGTGAAGAAGTCGTA 40629 ||||||| ||||||||| |||||||| || ||||| | || | || |||| ||| | Sbjct 296 GGCCTCGAGCCCGATGATCGGCTTGACACCCGCGGCATTGGCCGCCTTGTAGAACTCGAA 237 Query 40630 CGCACCGTGCAGGTTGCCGTGGTCGGTCATCGCGAGGGCCTTCATGCCCTG----CGCCT 40685 || || ||||||||| ||||||| ||||| |||| ||| | || || | Sbjct 236 AGCCGCGAAAGTGTTGCCGTGATCGGTCACCGCGATGGCCGGCAT--CTTGTAGTCGGC- 180 Query 40686 TGGCCTCGGCGAACATGTCCTTCAGTCGAGCCGCCCCGTCGAGAAGGCTGTACTCGGAGT 40745 |||| | | ||| | || | ||||| |||||||| | ||||||| || Sbjct 179 -GGCCGCCTGGGTCATCGCGTTGATCTTCGCCGCTCCGTCGAGCATCGAGTACTCGCTGT 121 Query 40746 GGACATGCAGGTGGACGAAG 40765 | || ||||||||||||||| Sbjct 120 GCACGTGCAGGTGGACGAAG 101 >seq10553 Length=379 Score = 194 bits (214), Expect = 5e-45 Identities = 274/383 (72%), Gaps = 9/383 (2%) Strand=Plus/Plus Query 38213 AGTCCGAAGCGGATCTCCCGCTCCCCGTTCGGGGTGAAGGAGGAGTTCGAGACCGACACG 38272 || ||||||||||| || || ||| | | |||| || | ||||| | || || Sbjct 1 AGGCCGAAGCGGATGTCG---TCGCCGACGGCCGCGAAGAAGTTGATCGAGTCGGAGACA 57 Query 38273 TCGGGCGGCAGGACCCGAAGGCCCATGCGCCTGCACTCGCCGAGGTACGTGGCCATCTTG 38332 |||||||| |||||| | ||||||||| | |||||| ||||| ||||||||| Sbjct 58 TCGGGCGGAAGGACCTTGATGCCCATGCGGCGGCACTCATTCAGGTAAAGCGCCATCTTG 117 Query 38333 TTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTC 38392 | |||| |||||| || |||||||| ||||||||||||||||| |||||||||| | Sbjct 118 TCCTTGGAGTCGCCGACGCTGGTGAGCAGCGCCGCCATGTACTCGGCGGGGTAGTGCGCC 177 Query 38393 TTCAGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAG 38452 || ||||| || || | || | || ||| ||||| || || ||||| || ||||||||| Sbjct 178 TTGAGGTATGCGGTCCAATACGAGACGAGACCGTATGCGGCGGAGTGGGCTTTGTTGAAG 237 Query 38453 GCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCCGGATGGCAGCGTCCGAGTAG 38512 ||||| | | |||||| | || | |||||||| |||| |||||| || || | | Sbjct 238 GCGTAGTCCGAGAAGGGCAGCAGGATGTCCCACAGCGCCTTGATGGCCGCCTCGCCGAAT 297 Query 38513 CCTCGCTCGCTTGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGG---GC 38569 || |||||| | || | |||| || ||| |||| | || ||||| | Sbjct 298 CCGCGCTCGGTCATACCGCCCGCGAAGCCTTCGTACTGCTTGTCGAG---CTCGGACTTC 354 Query 38570 TTCTTCTTGCCCATGGCGCGACG 38592 |||||||||||||| || ||||| Sbjct 355 TTCTTCTTGCCCATCGCTCGACG 377 >seq892 Length=133947 Score = 111 bits (122), Expect = 5e-20 Identities = 259/386 (67%), Gaps = 26/386 (7%) Strand=Plus/Minus Query 38571 TCTTCTTGCCCATGGCGCGACGGAGAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGA 38630 ||||||| |||||||| || || || || ||||| | || || || || |||| || Sbjct 125711 TCTTCTTACCCATGGCACGGCGCAGCAGATCGGCTTCGCCCAGCGTATAGCCGGACATTT 125652 Query 38631 TCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGA-GCCCGAAGGTCGGGTCCAGG 38689 |||||| || | |||||| |||||||||||||||| |||| | || | | Sbjct 125651 CCTGCGCGATCTGCATCACCTGTTCCTGGTAGATGATGACGCCC-----TGGGTTTC--- 125600 Query 38690 ATCTCGGCCAGCGGCTCCTCCACCTCGGGGTGGATCGGCGTGATCTCCTGCTGCCCGTTC 38749 || | | || | || | || ||| ||||||| || ||||||| | || ||| Sbjct 125599 --CTTGACGAGATGGTCG---ATCTTGGGATGGATCGACGCCATCTCCTCGTCGCCATTC 125545 Query 38750 TTGCGGAGGGCGTAGTTCGTGTGCGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCC 38809 ||||| |||| || || || | | |||||||||||||||||||||||||| Sbjct 125544 TTGCGC---GCGTTGTAGGT---CGGGATGTTTTCCATCGGACCCGGACGGTACAGCGCC 125491 Query 38810 ACGACGGCGGAGATGTCCTCGAACTGGTCCGGCTTCAGCAGGCGGAGCAGGG---AGCGC 38866 || | ||| ||||||||||| | |||| ||||| || || || ||| | |||| Sbjct 125490 ACAAGCGCGATGATGTCCTCGATCCGGTCGGGCTT---CATGCCGATCAGCGCCTTGCGC 125434 Query 38867 ATCGCGCCGCCGTCGAGCTGGAACACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTAC 38926 || || | || | ||||||||| || ||| ||||| | | ||||| || || Sbjct 125433 ATGCCGGTACTTTCCACCTGGAACACGCCGACCGTCTCGCCGCGCGACAGCATTTCATAG 125374 Query 38927 GTCGCGGGGTCATCCAGCGGGATGTT 38952 | |||||||||||| | ||| Sbjct 125373 CTGAGCTTGTCATCCAGCGGCAGGTT 125348 >seq3745 Length=368 Score = 91.5 bits (100), Expect = 5e-14 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 38535 GGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGA 38594 ||||| || || | |||||||| | | ||| |||||||||||| ||||| || | Sbjct 354 GGAAGATCTCGCGGTGCTTGGCCATTTCGGCCGGCACCTTCTTGCCCATCGCGCGGCGCA 295 Query 38595 GAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCT 38654 | |||||||| ||||| | ||| ||| ||| |||||||||| || | |||||||| Sbjct 294 GCAGGTCGGCGCCGCCGAGCGAGTAACCGCCCACGATCTGCGCCATCTGCATCACCTGCT 235 Query 38655 CCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATC 38692 ||||||| | |||| ||| |||| | ||||||| Sbjct 234 CCTGGTACACCATGATGCCGTAGGTGTCTTTCAGGATC 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160214536061300