Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_029003.2 Length=29733 Score E Sequences producing significant alignments: (Bits) Value seq12163 136 8e-28 seq3006 98.7 2e-16 seq1269 93.3 8e-15 seq3418 87.8 3e-13 seq9435 80.6 5e-11 >seq12163 Length=619 Score = 136 bits (150), Expect = 8e-28 Identities = 378/576 (66%), Gaps = 26/576 (5%) Strand=Plus/Plus Query 1655 GCAAAGTCCATGCCTTTCCACTGGTGACGCTCCAGCATGCGAAACTTGCCACCCGAAACC 1714 || ||||||||||| || |||||||||||||||||| ||| ||||||||||| | || Sbjct 7 GCGAAGTCCATGCCCTTGAACTGGTGACGCTCCAGCACGCGGAACTTGCCACCGGGCACT 66 Query 1715 ACCGGCGGCGCGAGTACGACACATCCGGCACTGTCGCCGGTGTGGGACGGGTCGTAGCCA 1774 |||||||| | | || ||||| |||||||| || | || ||||||||| ||| Sbjct 67 TGGGGCGGCGCCACAATCACGATGCCGGCGCTGTCGCCCGTCTCGGCCGGGTCGTACCCA 126 Query 1775 ATCCAGACCGGGCGCGAGCCGAATGGATGGTCGGCGAACGGGGCGAA---GTCCTCCCA- 1830 ||||| |||| ||| ||| |||| | |||||| ||| ||| | | |||| Sbjct 127 ATCCACACCGCGCGGTCGCCATATGGGCGCATGGCGAAGGGGCTGAACTCGCCGGCCCAC 186 Query 1831 TGTTTCCATCACGTCGACCATGCAGCGCTGCAGC-TCCTCGAACGGGAATACCGATGCCT 1889 | ||| | ||| ||| ||| |||||||| || || | |||||| || || Sbjct 187 TCCACCCAGC-TGTCCACCTGGCACGGCTGCAGCATCGTC-AGCGGGAACACGCTGGCGC 244 Query 1890 TATCGTCGACAAACTCGCACATAAACAGGTTCTTAAAGTCCTCATCACTGTTTTCGCGTC 1949 | ||||| || ||||||||||| | |||||| || ||||| | |||| Sbjct 245 TGTCGTCCACGAACTCGCACATCAGCAGGTTGGCGAATTCCTCGGCGCTGT--------- 295 Query 1950 TGAGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCCTCAATAGTGACAA 2009 | | |||||||| ||| || | | | ||||| | ||||| | Sbjct 296 -------NNCCACATCGAACAGATCGCACCCTCGGTCGGCCGCGTCGAGCACTGTGACGA 348 Query 2010 TCTGCCGCCACTGTCCGTCAGCGCAAAGAAGCCCACCGGCGAGCGCGCTGTGACTGATGT 2069 |||||||||| |||| |||| | | |||| | | ||| || ||| |||| | Sbjct 349 TCTGCCGCCAGATAGCGTCCTCGCAGCGTCGGCCACTGCCCAGCCGGCCGTGGCTGACAT 408 Query 2070 CGATTTCGATGCGGTCAGCGGCACTGGCGCGCCCCTTGTTGAACAGCTCGCCAGACCAGA 2129 ||| ||||| | | | | ||| | ||||||||||| ||||||| | ||||| Sbjct 409 CGA--TCGATACCTGCTGGGAGGTCGGCTTG-CCCTTGTTGAAGCGCTCGCCTGTCCAGA 465 Query 2130 AGGGGTAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTAAGTTGAGCGCAGATGCT 2189 | ||| || ||||||||| |||||||| || ||||| || |||| | || Sbjct 466 AATCGTAGGCTTCGTGCGCCATGGTGGAAGGCGTGCTGAAGTAGGTCTTGCGCCATTTCT 525 Query 2190 TTTGCGAGGCCATGCCCGATGCGACTTTGCGCAGCT 2225 | ||| |||||||| ||||| ||| ||||| Sbjct 526 TGTGCATCGCCATGCCGCTGGCGACCTTGTTCAGCT 561 >seq3006 Length=629 Score = 98.7 bits (108), Expect = 2e-16 Identities = 175/251 (70%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 14558 GGCTGGCACAAAACCCTGTCTAACGTTGGTGTACAGGGAGTTACCGGCATCAGCGCCTCA 14617 |||||||| || | ||||| ||||| | ||| || || |||||||||||| Sbjct 21 GGCTGGCATAAGTCGCTGTCCAACGTGGCCGTAGCCGGCGTGACCGGCATCAGCCGGGAC 80 Query 14618 GTGTTCTGGGATTTGCAGGCATCCGGC-ACCGATGCTGACCTTCTCAACGAGGCCGGGGT 14676 || ||||| |||||| ||||||| ||||| || | | | ||||| | |||| | Sbjct 81 GTCCATTGGGACCTGCAGG-ATCCGGCGACCGACGCCGGCATGCTCAATGCCGCCGATAT 139 Query 14677 TACAACTCTGGT--ACGCAAGGACGGTTTCCGCTTCTGGGGTAACCGCACCTGCTCAGAT 14734 || || ||| | || | | |||| | | |||||||| ||||||||| ||| Sbjct 140 CACCACGCTGATCAACTCCA--ACGGGTACAAGTTCTGGGGATCGCGCACCTGCAGCGAT 197 Query 14735 GACCCGCTTTTTCTGTTTGAGAACTACACCCGTACCGCGCAGGTACTGGCCGACACGATG 14794 || ||||| ||| || |||| || |||||| || |||||| | ||||||||||| || Sbjct 198 GAGCCGCTGTTTGCCTTCGAGACCTCCACCCGCACGGCGCAGATCCTGGCCGACACCATC 257 Query 14795 GCTGAAGCGCA 14805 || || ||||| Sbjct 258 GCCGAGGCGCA 268 >seq1269 Length=1066 Score = 93.3 bits (102), Expect = 8e-15 Identities = 168/238 (71%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 2662 GTTACGGTTGGCAACGTTGGGGTTAAGGTCGGCCTCGTTGCCGGTCTGGCTG-TAGCGGT 2720 ||| |||||||| || ||||| ||||| |||||||||||| | ||| || || | Sbjct 16 GTTGCGGTTGGCGACCGCTGGGTTCAGGTCCGCCTCGTTGCCGC-CGCCCTGGTAACGCT 74 Query 2721 TGACGCGCGCCAGTCGCTCAATCTGCCGCCCGAGCAGGTCAATCTCTTTGAAGTCGCCGC 2780 || ||| ||| | ||||| | |||||| |||||||| ||||||||||||||||||| Sbjct 75 GGATGCGGGCCTGCCGCTCCAGCTGCCGATGCAGCAGGTCGATCTCTTTGAAGTCGCCGC 134 Query 2781 CTGACTTTTGCGGCTTGGCGATGAGCTGAATCAGGCGCGCCT-CAAGGCTGCTTTCGACA 2839 | | ||| |||| ||| || || ||||||| |||||| || | ||| Sbjct 135 CGGTCTTACCTTCCTTGTGGATCAGGATGGCCAACCGCGCCTCCAAGGC-GCCGCCAACA 193 Query 2840 CGGGAAATCGGT-GCGATGCCGTCCCAGCCGTCGCGCTGTTTCCAGCTTTGCACGGTC 2896 || | |||| || || |||||| |||||||| |||||||| || |||||| Sbjct 194 CGCTCCA-CGGTATCGGCGCGGTCCCATTCGTCGCGCGCCTTCCAGCTGTGGACGGTC 250 >seq3418 Length=506 Score = 87.8 bits (96), Expect = 3e-13 Identities = 231/342 (68%), Gaps = 18/342 (5%) Strand=Plus/Minus Query 419 CTTGATGTTGAAAAAGTCATCCTTTGTGGCGACTTCGCTCAATGGCACGATTTTGATGCC 478 |||||||||| || |||||||| | || || ||||||| || | ||| | | || Sbjct 431 CTTGATGTTGGCGAACTCATCCTTGGCCGCCACCTCGCTCACCGGGATGATCTGCAGACC 372 Query 479 GTCCGGTTTTCCGCCGGGAGCGTAGAAAAACAGGTTTTTAAAGTTGCCGAGCCC---TTT 535 ||| || ||| ||| | | | |||||||| |||||||| | || | Sbjct 371 GTCTTTCTTGCCGTTGGGCGAATGCACGAACAGGTTCCGGAAGTTGCCCGGACCACGTGC 312 Query 536 CGAGTTACGCATCGCCTCGCGCAG--CGATTCGACGTCGGTCGCGCTCTGCGCCGGG--T 591 || || || ||||||||||| || || ||||||| || || || | ||| | Sbjct 311 CGCCTTGAGC---GCCTCGCGCAGGCCGGTT--ACGTCGGACGAT-TCCGC-CTGGGAAT 259 Query 592 CAGTCACATACATGATGTAACCTGCGTGCGCGCCGTTCTGGTAATACTTGCGGCGGAACA 651 | |||| || | |||| | || ||||||| |||||| | ||| |||||||| ||||||| Sbjct 258 CGGTCAGGTAGAGGATGAAGCCGGCGTGCGAGCCGTTGTTGTAGTACTTGCGCCGGAACA 199 Query 652 GCGTCGCGGATTCATTCAGCCATGCGGAATTAAGCGCGCTGAGAT--ATTCAGGCAGGCC 709 |||| || || || || ||| |||| | | || || | || | || |||||||| Sbjct 198 GCGTGGCCGACTCGTTGAGCAGCGCGGCCTGCA-CG-GCCGGCATCCACTCGGGCAGGCC 141 Query 710 GTAAATCTCCTGATTAATATCAGGCTCCAGCAGGTGGAACAC 751 ||| | |||||| | ||| | |||| |||| ||| |||| Sbjct 140 GTACACCTCCTGGTCTGCATCGGACTCCCGCAGCTGGTACAC 99 >seq9435 Length=520 Score = 80.6 bits (88), Expect = 5e-11 Identities = 270/411 (66%), Gaps = 12/411 (3%) Strand=Plus/Plus Query 4724 GACTATGAGAACCTCGACGCGCTGGTGATGGATGCGACCAATAACCTGATTGA--CGAGG 4781 ||||| | ||||| ||||||||||| ||||||| | | |||||| || || || Sbjct 86 GACTACGCCAACCTGGACGCGCTGGTTATGGATGTGGTGTCCACCCTGATCGAGCCGTGG 145 Query 4782 TTTATCAGGATGACCCGAAACTCGTTGCCATCGTTGGCCGTAAGCTGCTGGCCGACAAAT 4841 | ||| | || ||| | || | |||| | ||||| || ||| || |||||| | Sbjct 146 --CACCAGCAGGATCCGGGCTTGGTGGTCATCCTGGGCCGCAACCTGGTGCACGACAAGT 203 Query 4842 ATTTCCCGCTGGTGAACAAGCCGCAGGAAAACAGCGAGGCGCTCGCGGCAGATATCATCA 4901 | ||||| | | |||||| | || | |||| ||| || || ||| | | Sbjct 204 ACTTCCCCATCATCAACAAGGACCTGGCGCCGACCGAGCAGCTGGCCGCGGATCTGGTGC 263 Query 4902 TCAGCCAGAAGCGAATCGGCAACCTGCCTGCTGTGCGTGTGCCGTACTTCCCGGCGAATG 4961 | || ||||| ||||| ||||| | ||| ||||| | | ||||||| || | Sbjct 264 TGGGCACTAAGCGCATCGGTGGCCTGCAGCCGGTGATCGTGCCTTTCGTCCCGGCCAACG 323 Query 4962 CCGTGTTAGTGACCACGCTGGAAAACCTCTCTATCTA-TTTCATGGAT-GAGAGCCACCG 5019 || || | || ||| ||||||| || || || ||||| | || ||| || ||| ||| Sbjct 324 CCCTGATGGTCACCTCGCTGGACAATCTGTCGATCTACTGGCA--GATCGACGGCCGCCG 381 Query 5020 CCGCAGCATTGATGAAAACCCGAAAAAAGACCGCGTGGAAAACTACGAGTCGATGAATAT 5079 ||| | | || | ||| | || ||||||||| |||| ||||||| || Sbjct 382 CCGTTACCTCATCGAGCAGCCGCAGAAGAACCGCGTGGCGAACTTCGAGTCGTCCAACGA 441 Query 5080 CGACTATGTGGTCGAGGCGTATGCCGCCG-GGTG-CCTGCTGGAAAACATC 5128 |||||| |||||||| | || | |||| || | |||| | || |||||| Sbjct 442 CGACTACGTGGTCGAAGACTA--CGGCCGTGGCGCCCTGGTCGAGAACATC 490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95008899617380