Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_029066.1 Length=48666 Score E Sequences producing significant alignments: (Bits) Value seq3933 208 2e-49 >seq3933 Length=4962 Score = 208 bits (230), Expect = 2e-49 Identities = 313/446 (70%), Gaps = 33/446 (7%) Strand=Plus/Minus Query 6112 TTCTCGACGATCCGTTGCGCTTCGTCTTCGTCAAAGATGCCGGTGTAGCCAAAGGCGAGT 6171 || ||||| || || | ||||| || | |||| |||| || | | || ||||| || Sbjct 4044 TTTTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAGGCCAGA 3985 Query 6172 CGGGCGCACTGGATCATGGCTTTGTGGCGCAGCATCCGCTTCGGATGGCTCTGCCAGGG- 6230 ||||| ||||| ||||||||||| || || | |||||| || ||||| |||||| || Sbjct 3984 CGGGCACACTGAATCATGGCTTTATGACGTAACATCCGTTTGGGATGCGACTGCCACGGT 3925 Query 6231 ----------------CT----GGGTGTTGC--GCTT-------GCACTCGGCCATCCAT 6261 || |||| ||| | || ||| || ||||||| Sbjct 3924 CCGGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTTCGCGGCGGCATTCATCCATCCAC 3865 Query 6262 TCGGTGACCTTGATTGGGTGATTGCGGTCCTTGCGATAGATGATGCAGGTGCATGACTCG 6321 ||||| || ||| || ||||||||||||||||| || || ||| ||||| || || Sbjct 3864 TCGGTAACGCAGATCGGATGATTGCGGTCCTTGCGGTAAATCCGGCATGTGCAGGATTCA 3805 Query 6322 TCGTCCTGCTGGAAGTCCATCCCATCGAACGCGCCATTTTCATTAATGATCCGCGACCAT 6381 | |||||||| |||||||| ||||| ||| |||||||| ||||| || ||||| Sbjct 3804 TTGTCCTGCTCAAAGTCCATACCATCAAACTGCTGGTTTTCATTGATGATGCGGGACCAG 3745 Query 6382 CCGTCCACGCCTACGACCGGCACGATGCC--TC-CCTTATCCGGGAAGGCATAGATCTCC 6438 || || ||||| || ||||| |||||||| || |||||| |||||||| || || || Sbjct 3744 CCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTAAATTTCT 3685 Query 6439 TTCGTCCAGGGGTTCAGGCCGTACTGGTCAGCGACGATCAGGAGCGCCTGCATCTGCGCG 6498 |||||||| || || ||||||||||||| ||||||||||| | || | |||||| Sbjct 3684 TTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGATCAGCAATGCGATGAACTGCGCA 3625 Query 6499 TCGCTGACTTGGCCCTTGAAGGCTGT 6524 |||||| | | ||| || || || || Sbjct 3624 TCGCTGGCATCGCCTTTAAATGCCGT 3599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155584871883952