Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq132 197 7e-46 seq9105 190 1e-43 seq8692 156 2e-33 seq964 156 2e-33 >seq132 Length=332281 Score = 197 bits (218), Expect = 7e-46 Identities = 404/598 (68%), Gaps = 7/598 (1%) Strand=Plus/Minus Query 66141 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGT 66200 |||| ||||| | || || || ||||| || ||| || || ||| |||| ||| Sbjct 246290 CCGAAAGGCCGCATTGTCGAGATTTACGGGCCGGAAAGCTCGGGTAAGACAACCCTGGCG 246231 Query 66201 CTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCTGCCTACATCGACGCTGAG 66260 || || || | || | ||||||||| || |||| | |||| | ||||||| || Sbjct 246230 CTGCATACGATTGCGGAAGCCCAGAAGAAGGGCGGCATCTGCGCCTTCGTCGACGCGGAA 246171 Query 66261 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 66320 || | |||||||| | || ||| ||| || ||||| || || || || || | Sbjct 246170 CATGCGCTGGACCCGGTCTATGCCCGCAAGCTGGGCGTGGATCTGGAGAATCTGCTGATC 246111 Query 66321 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 66380 ||||| || || ||||||||||| ||||||||| ||| || || || || Sbjct 246110 TCGCAGCCCGATACGGGCGAGCAGGCGCTGGAGATCACCGACACGCTGGTGCGTTCCGGT 246051 Query 66381 GAGCTGTCCATCGTC--GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCG 66438 | | | | || || || || || || || || || || ||||| || || ||| Sbjct 246050 GCGAT--CGATGTTCTGGTGGTCGATTCCGTTGCCGCTTTGACCCCGCGTGCGGAAATCG 245993 Query 66439 AAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGC 66498 ||||||| || || || || | ||||||||| || ||||| ||| ||||| ||| Sbjct 245992 AAGGCGAGATGGGCGATTCTCTCCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGC 245933 Query 66499 GCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGC 66558 ||||||| |||| |||| ||| | ||||| || | | |||||||| | | Sbjct 245932 GCAAGCTGACCGCATCCATTTCCCGTTCCAACTGCATGGTCATTTTCATCAACCAGATCC 245873 Query 66559 GCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTT 66618 || |||||||||| ||| | ||| || || ||||| ||||||||||| || Sbjct 245872 GCATGAAGATCGGC---GTGATGTTCGGTTCGCCTGAAACCACGACGGGCGGCAATGCGC 245816 Query 66619 TGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCG 66678 ||| ||||| || || || || | ||| |||| ||||||| | ||||||| | | Sbjct 245815 TGAAATTCTATGCTTCGGTGCGTCTCGATATCCGCCGCATCGGTGCGCTGAAGGAACGTG 245756 Query 66679 ATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66736 | |||| |||||||||| ||||| || ||||| |||||||||||||| || || || Sbjct 245755 ACGAGGTGGTCGGCAACCAGACCCGCGTCAAGGTGGTCAAGAACAAGCTTGCGCCCCC 245698 >seq9105 Length=354 Score = 190 bits (210), Expect = 1e-43 Identities = 194/250 (78%), Gaps = 5/250 (2%) Strand=Plus/Minus Query 66391 TCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCG 66450 || ||||| ||||||| |||||||| || ||||| ||||||||| |||| ||||| || | Sbjct 246 TCATCGTCATTGACTCCGTGGCGGCGCTCGTGCCCCGCGCCGAGATCGAGGGCGAGATGG 187 Query 66451 GGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCG 66510 | ||| |||||||| ||||| ||||| |||||||||||||| |||| |||||||||| Sbjct 186 GCGACTCGCACGTCGGTCTGCAGGCGCGACTCATGTCGCAGGCGCTGCGTAAGCTCACCG 127 Query 66511 G-CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATC 66569 | || |||| ||||||||| || | ||| |||||||| | |||||||||||| Sbjct 126 GTGGCCTGAACCAG-ACCAACACGACGATGATCTTCATCAACCAGCTTCGCGAGAAGATC 68 Query 66570 GGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTAC 66629 || ||| || |||| || |||||| ||| | || || ||||| ||| ||||||| Sbjct 67 GG---CGTCTTCTTCGGCTCGCCCGAGACGACCGCCGGTGGTAAGGCGCTGAAGTTCTAC 11 Query 66630 GCCTCAGTCC 66639 ||||| |||| Sbjct 10 GCCTCGGTCC 1 >seq8692 Length=1388 Score = 156 bits (172), Expect = 2e-33 Identities = 295/425 (69%), Gaps = 8/425 (2%) Strand=Plus/Plus Query 66081 GTGGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGG-TA 66139 || || ||||| |||||||| || | ||||| ||| || ||||| || || | Sbjct 968 GTCGAGGTCATCCCCACCGGTTCGCTGATGCTGGATATCGCACTCGGCATTGGTGGACTG 1027 Query 66140 CCCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTG 66199 ||| |||||| | || || ||||||||||| || ||||| || || ||| | || ||| Sbjct 1028 CCCAAGGGGC-GTGTCGTTGAAATCTACGGTCCGGAATCCTCGGGCAAGACCACCCTGAC 1086 Query 66200 TCTCCACGCGGTGGCC-AATGCCCAGAAGGCCGGTGGCAACGCTGCCTACATCGACGCTG 66258 || || || | ||| |||| ||||||| || |||| |||||||| ||||||||| | Sbjct 1087 CCTGCAGGCCATTGCCGAATG-CCAGAAGAAGGGCGGCACCGCTGCCTTCATCGACGCCG 1145 Query 66259 AGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGG 66318 |||| | |||||||| |||||| ||| || ||| || | ||| |||| || Sbjct 1146 AGCATGCACTGGACCCGATCTACGCCGCCAAGCTGGGCGTGAACGTGGACGACCTGCTGC 1205 Query 66319 TGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTG 66378 || ||||| || || || |||||||| ||||| |||| ||| | || || ||| Sbjct 1206 TGTCGCAGCCCGATACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGGTCCA 1265 Query 66379 GCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCG 66438 || | || ||| || || || ||||| || || || ||| || ||||| ||| Sbjct 1266 GCTCGGTGGACATTGTGGTGGTCGACTCGGTCGCCGCGCTGACCCCCAAGGCCGAAATCG 1325 Query 66439 AAGGCGACATCGGGGA-CAG-TCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCAT 66496 ||||||| || || || ||| | || |||||||| || || || ||| ||||| | Sbjct 1326 AAGGCGAAATGGGCGACCAGCTGCCG--GGCCTGCAGGCCCGTCTGATGAGCCAGGCGCT 1383 Query 66497 GCGCA 66501 ||||| Sbjct 1384 GCGCA 1388 >seq964 Length=324 Score = 156 bits (172), Expect = 2e-33 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 66620 GAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGA 66679 || |||||||||||| ||||||||||| ||||||| |||| ||| ||||| || Sbjct 1 GAAGTTCTACGCCTCGGTCCGCATGGACATCCGTCGTATCGAGACCCTCAAGGACGGAAC 60 Query 66680 TGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCA 66739 || || ||||| ||||||||| |||| ||||| |||||||||||| |||| |||||| Sbjct 61 CGACGCCGTCGGAAACCGCACCAGGGTCAAGGTGGTCAAGAACAAGATGGCGCCGCCGTT 120 Query 66740 CCGCAATGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCT 66799 | | ||||||||| | || | ||||| | |||||||| ||||||| | || | Sbjct 121 CAAGCAGGCCGAGTTCGACATCCTCTACGGCGTCGGCATCTCCCGTGAGGGCAGCCTGAT 180 Query 66800 CGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACG 66855 |||| | | ||| ||| | | | ||||||||||||||| | |||| || |||| Sbjct 181 CGACTTCGGCGTCGAGCACGCCATCGTGAAGAAGTCGGGCTCGTGGTACACCTACG 236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240920701080600