Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20deminutivum_20[genbank_20GCA_5F900092275.1_202017- 01-02] 13,382 sequences; 45,801,537 total letters Query= NC_029093.1 Length=75796 Score E Sequences producing significant alignments: (Bits) Value seq132 197 7e-46 seq9105 190 1e-43 seq964 156 2e-33 seq8692 152 2e-32 >seq132 Length=332281 Score = 197 bits (218), Expect = 7e-46 Identities = 404/598 (68%), Gaps = 7/598 (1%) Strand=Plus/Minus Query 65805 CCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGT 65864 |||| ||||| | || || || ||||| || ||| || || ||| |||| ||| Sbjct 246290 CCGAAAGGCCGCATTGTCGAGATTTACGGGCCGGAAAGCTCGGGTAAGACAACCCTGGCG 246231 Query 65865 CTCCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAG 65924 || || || | || | || |||||| || |||| | ||||| | ||||||| || Sbjct 246230 CTGCATACGATTGCGGAAGCCCAGAAGAAGGGCGGCATCTGCGCCTTCGTCGACGCGGAA 246171 Query 65925 CACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTG 65984 || | |||||||| | || ||| ||| || ||||| || || || || || | Sbjct 246170 CATGCGCTGGACCCGGTCTATGCCCGCAAGCTGGGCGTGGATCTGGAGAATCTGCTGATC 246111 Query 65985 GTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGC 66044 ||||| || || ||||||||||| ||||||||| ||| || || || || Sbjct 246110 TCGCAGCCCGATACGGGCGAGCAGGCGCTGGAGATCACCGACACGCTGGTGCGTTCCGGT 246051 Query 66045 GAGCTGTCCATCGTC--GTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCG 66102 | | | | || || || || || || || || || || ||||| || || ||| Sbjct 246050 GCGAT--CGATGTTCTGGTGGTCGATTCCGTTGCCGCTTTGACCCCGCGTGCGGAAATCG 245993 Query 66103 AAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGC 66162 ||||||| || || || || | ||||||||| || ||||| ||| ||||| ||| Sbjct 245992 AAGGCGAGATGGGCGATTCTCTCCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGC 245933 Query 66163 GCAAGCTCACCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGC 66222 ||||||| |||| |||| ||| | ||||| || | | |||||||| | | Sbjct 245932 GCAAGCTGACCGCATCCATTTCCCGTTCCAACTGCATGGTCATTTTCATCAACCAGATCC 245873 Query 66223 GCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTT 66282 || |||||||||| ||| | ||| || || ||||| ||||||||||| || Sbjct 245872 GCATGAAGATCGGC---GTGATGTTCGGTTCGCCTGAAACCACGACGGGCGGCAATGCGC 245816 Query 66283 TGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCG 66342 ||| ||||| || || || || | ||| |||| ||||||| | ||||||| | | Sbjct 245815 TGAAATTCTATGCTTCGGTGCGTCTCGATATCCGCCGCATCGGTGCGCTGAAGGAACGTG 245756 Query 66343 ATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66400 | |||| |||||||||| ||||| || ||||| |||||||||||||| || || || Sbjct 245755 ACGAGGTGGTCGGCAACCAGACCCGCGTCAAGGTGGTCAAGAACAAGCTTGCGCCCCC 245698 >seq9105 Length=354 Score = 190 bits (210), Expect = 1e-43 Identities = 194/250 (78%), Gaps = 5/250 (2%) Strand=Plus/Minus Query 66055 TCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCG 66114 || ||||| ||||||| |||||||| || ||||| ||||||||| |||| ||||| || | Sbjct 246 TCATCGTCATTGACTCCGTGGCGGCGCTCGTGCCCCGCGCCGAGATCGAGGGCGAGATGG 187 Query 66115 GGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCG 66174 | ||| |||||||| ||||| ||||| |||||||||||||| |||| |||||||||| Sbjct 186 GCGACTCGCACGTCGGTCTGCAGGCGCGACTCATGTCGCAGGCGCTGCGTAAGCTCACCG 127 Query 66175 G-CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATC 66233 | || |||| ||||||||| || | ||| |||||||| | |||||||||||| Sbjct 126 GTGGCCTGAACCAG-ACCAACACGACGATGATCTTCATCAACCAGCTTCGCGAGAAGATC 68 Query 66234 GGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTAC 66293 || ||| || |||| || |||||| ||| | || || ||||| ||| ||||||| Sbjct 67 GG---CGTCTTCTTCGGCTCGCCCGAGACGACCGCCGGTGGTAAGGCGCTGAAGTTCTAC 11 Query 66294 GCCTCAGTCC 66303 ||||| |||| Sbjct 10 GCCTCGGTCC 1 >seq964 Length=324 Score = 156 bits (172), Expect = 2e-33 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 66284 GAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGA 66343 || |||||||||||| ||||||||||| ||||||| |||| ||| ||||| || Sbjct 1 GAAGTTCTACGCCTCGGTCCGCATGGACATCCGTCGTATCGAGACCCTCAAGGACGGAAC 60 Query 66344 TGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCA 66403 || || ||||| ||||||||| |||| ||||| |||||||||||| |||| |||||| Sbjct 61 CGACGCCGTCGGAAACCGCACCAGGGTCAAGGTGGTCAAGAACAAGATGGCGCCGCCGTT 120 Query 66404 CCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCT 66463 | | ||||||||| | || | ||||| | |||||||| ||||||| | || | Sbjct 121 CAAGCAGGCCGAGTTCGACATCCTCTACGGCGTCGGCATCTCCCGTGAGGGCAGCCTGAT 180 Query 66464 CGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACG 66519 |||| | | ||| ||| | | | ||||||||||||||| | |||| || |||| Sbjct 181 CGACTTCGGCGTCGAGCACGCCATCGTGAAGAAGTCGGGCTCGTGGTACACCTACG 236 >seq8692 Length=1388 Score = 152 bits (168), Expect = 2e-32 Identities = 294/425 (69%), Gaps = 8/425 (2%) Strand=Plus/Plus Query 65745 GTGGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGG-TA 65803 || || ||||| |||||||| || | ||||| ||| || ||||| || || | Sbjct 968 GTCGAGGTCATCCCCACCGGTTCGCTGATGCTGGATATCGCACTCGGCATTGGTGGACTG 1027 Query 65804 CCCGAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTG 65863 ||| |||||| | || || ||||||||||| || ||||| || || ||| | || ||| Sbjct 1028 CCCAAGGGGC-GTGTCGTTGAAATCTACGGTCCGGAATCCTCGGGCAAGACCACCCTGAC 1086 Query 65864 TCTCCACGCGGTGGCC-AATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTG 65922 || || || | ||| ||||| |||||| || |||| ||| |||| ||||||||| | Sbjct 1087 CCTGCAGGCCATTGCCGAATGC-CAGAAGAAGGGCGGCACCGCTGCCTTCATCGACGCCG 1145 Query 65923 AGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGG 65982 |||| | |||||||| |||||| ||| || ||| || | ||| |||| || Sbjct 1146 AGCATGCACTGGACCCGATCTACGCCGCCAAGCTGGGCGTGAACGTGGACGACCTGCTGC 1205 Query 65983 TGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTG 66042 || ||||| || || || |||||||| ||||| |||| ||| | || || ||| Sbjct 1206 TGTCGCAGCCCGATACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGGTCCA 1265 Query 66043 GCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCG 66102 || | || ||| || || || ||||| || || || ||| || ||||| ||| Sbjct 1266 GCTCGGTGGACATTGTGGTGGTCGACTCGGTCGCCGCGCTGACCCCCAAGGCCGAAATCG 1325 Query 66103 AAGGCGACATCGGGGA-CAG-TCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCAT 66160 ||||||| || || || ||| | || |||||||| || || || ||| ||||| | Sbjct 1326 AAGGCGAAATGGGCGACCAGCTGCCG--GGCCTGCAGGCCCGTCTGATGAGCCAGGCGCT 1383 Query 66161 GCGCA 66165 ||||| Sbjct 1384 GCGCA 1388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242382862573214